Locus 6784

Sequence ID X_DroMel_CAF1
Location 16,884,432 – 16,884,528
Length 96
Max. P 0.995193
window11112

overview

Window 2

Location 16,884,432 – 16,884,528
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -23.65
Consensus MFE -23.18
Energy contribution -23.38
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.98
SVM decision value 2.55
SVM RNA-class probability 0.995193
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16884432 96 + 22224390
AUCCACAUCCACAUCCACCCAAAUGACAAGCCAGCAGUUGUGCAUCCAGCUCAAUUUAGUUGCCCAACCGCCCGGGGCAACGCACCAUGGCAAACG
.............................(((((((((((.((.....)).)))))..(((((((.........)))))))))....))))..... ( -24.00)
>DroSec_CAF1 83759 96 + 1
AUCCACGUCCACAUCCACCCAAAUGACAAGCCAGCAGUUGUGCAUCCAGCUCAAUUUAGUUGCCCAACCGCCCGGGGCAACGCACCAUGGCAAACG
......(((...............)))..(((((((((((.((.....)).)))))..(((((((.........)))))))))....))))..... ( -24.46)
>DroSim_CAF1 64077 96 + 1
AUCCACAUCCACAUCCACCCAAAUGACAAGCCAGCAGUUGUGCAUCCAGCUCAAUUUAGUUGCCCAACCGCCCGGGGCAACGCACCAUGGCAAACG
.............................(((((((((((.((.....)).)))))..(((((((.........)))))))))....))))..... ( -24.00)
>DroEre_CAF1 68450 96 + 1
AUCCAUAUCCACAUCCACCCAAAUGACAAGCCAGCAGUUGUGCAUCCAGCUCAAUUUAGCUGCCCAACCGCCAGGGGCAACGCACCAUGGCAAGCG
.............................(((((((((((.((.....)).)))))..)))).......((((.((((...)).)).))))..)). ( -21.50)
>DroYak_CAF1 70064 96 + 1
AUCCUCAUCCUCAUCCAGCUAAAUGACAAGCCAGCAGUUGUGCAUCCAGCUCAAUUUAGUUGCCCAACCGCCCGGGGCAACGCACCAUGGCAAACG
..........((((........))))...(((((((((((.((.....)).)))))..(((((((.........)))))))))....))))..... ( -24.30)
>consensus
AUCCACAUCCACAUCCACCCAAAUGACAAGCCAGCAGUUGUGCAUCCAGCUCAAUUUAGUUGCCCAACCGCCCGGGGCAACGCACCAUGGCAAACG
.............................(((((((((((.((.....)).)))))..(((((((.........)))))))))....))))..... (-23.18 = -23.38 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:52 2006