Locus 6782

Sequence ID X_DroMel_CAF1
Location 16,869,339 – 16,869,438
Length 99
Max. P 0.872814
window11109

overview

Window 9

Location 16,869,339 – 16,869,438
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 71.62
Mean single sequence MFE -18.70
Consensus MFE -1.17
Energy contribution -2.45
Covariance contribution 1.28
Combinations/Pair 1.27
Mean z-score -1.94
Structure conservation index 0.06
SVM decision value 0.88
SVM RNA-class probability 0.872814
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16869339 99 - 22224390
GAACGCUUUCGUACUAAUGAAAUAUCCUGUAAGGGAAUCCGAAGGGAAAUGAAAUAAAGACAG-GAUAAGUGGAGAAAGUCCUGUUCUGAUUCAAUUACC
((((((((((.((((.......((((((((.......(((....)))............))))-))))))))..))))))...))))............. ( -22.62)
>DroSec_CAF1 67800 80 - 1
---------------AAUAUAAUAUCCUGUAAGGGAAUCCGA----AAAUCAAAUAAGAACAG-GUUAAGUGGAGAAACUCCUGUUCUGAUUCAAUUACC
---------------.............((((..(((((.(.----....).....(((((((-(...(((......))))))))))))))))..)))). ( -19.10)
>DroSim_CAF1 48020 80 - 1
---------------AAUAUAAUAUCCUGUAAAGGAAUCCGA----AAAUCAAAUAAGAACAG-GUUAAGUGAAGAAACUCCUGUUCUGAUUCAAUUACC
---------------.............((((..(((((.(.----....).....(((((((-(...(((......))))))))))))))))..)))). ( -17.90)
>DroEre_CAF1 52523 100 - 1
CAACGCCUUCCUGCUUAUAUAAUAUCCUGUAAGGACGUUCGACGGGAAAUCAAAUAAAAAGCGAUAUACGUAGAGCAACACCCUUUCUGAUCCAAUUAGC
...........(((((........((((((...(.....).)))))).............(((.....))).)))))....................... ( -12.30)
>DroYak_CAF1 54461 82 - 1
------------------CUAAUAUCCUGCAAGGUAAUUCGAAGGGAAAUCAAAUAAGAAGCGGCAUAAGUGGAGAAACACCUGUGCUGAUUCAAUUAGC
------------------(((((.((((....((....))...))))..........(((.(((((((.(((......))).))))))).))).))))). ( -21.60)
>consensus
_______________AAUAUAAUAUCCUGUAAGGGAAUCCGA_GGGAAAUCAAAUAAGAACAG_GAUAAGUGGAGAAACUCCUGUUCUGAUUCAAUUACC
........................((((....))))....................(((((((..................)))))))............ ( -1.17 =  -2.45 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:50 2006