Locus 6780

Sequence ID X_DroMel_CAF1
Location 16,859,531 – 16,859,634
Length 103
Max. P 0.855163
window11105

overview

Window 5

Location 16,859,531 – 16,859,634
Length 103
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 89.44
Mean single sequence MFE -35.64
Consensus MFE -28.70
Energy contribution -28.70
Covariance contribution -0.00
Combinations/Pair 1.07
Mean z-score -1.76
Structure conservation index 0.81
SVM decision value 0.80
SVM RNA-class probability 0.855163
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16859531 103 + 22224390
UUUGCGC-CCGCGACGUUUAAUAAACGAGAAAUAGCUGGCAUAGCACAGCGCCACAUGGCGUAUACUUGAUGUGUCAAGCGCGGGCAGGGUGGAAAACGCGGUA----
.((((((-((((..((((.....)))).......(((((((((.((..(((((....))))).....)).)))))).)))))))))...((.....))))))..---- ( -37.60)
>DroSec_CAF1 58173 103 + 1
UUUGCGU-CCGCGACGUUUAAUAAACGAGAAAUAGCUGGCAUAGCACAGCGCCACAUGGCGUAUACUUGAUGUGUCAAGCGCGGGCAGGGUGGGAAAUGCGGCA----
..(((((-((((..((((.....)))).......(((((((((.((..(((((....))))).....)).)))))).))))))))).(.((.....)).).)))---- ( -34.60)
>DroEre_CAF1 43428 107 + 1
UUUGCGC-CCGCGACGUUUAAUAAACGAGAAAUAGCUGGCAUAGCACAGCGCCACAUGGCGUAUACUUGAUGUGUCAAGCGCUGGCAGAGUGGGAAACGCGGAAAAGG
(((((((-((((..((((.....)))).......((..((........(((((....)))))...(((((....))))).))..))...)))))...))))))..... ( -37.70)
>DroYak_CAF1 42902 107 + 1
UUUGCGC-CCGCGACGUUUAAUAAACGAGAAAUAGCUGGCAUAGCACAGCGCCACAUGGCGUAUACUUGAUGUGUCAAGCGCGGGCAGAGUGGGAAAAGCGGAAAAGC
(((((.(-((((..((((.....)))).......(((.((........(((((....)))))...(((((....))))).)).)))...)))))....)))))..... ( -36.30)
>DroAna_CAF1 65710 108 + 1
UUUGCUCGCCGCGACGUUUAAUAAACGAGAAAUAGCUGGCAUAGCAUCGCGCCACAUGGCGUAUACUUGAUGUGUCAAGCGCGGGCCAGGACGAAAAUGUAAGGAGGG
....(((.((...((((((........(....)..(((((...((...(((((....)))))...(((((....))))).))..))))).....))))))..)).))) ( -32.00)
>consensus
UUUGCGC_CCGCGACGUUUAAUAAACGAGAAAUAGCUGGCAUAGCACAGCGCCACAUGGCGUAUACUUGAUGUGUCAAGCGCGGGCAGGGUGGGAAACGCGGAAA_G_
(((((...((((..((((.....)))).......(((((((((.((..(((((....))))).....)).)))))).))))))))))))................... (-28.70 = -28.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:47 2006