Locus 6777

Sequence ID X_DroMel_CAF1
Location 16,854,232 – 16,854,337
Length 105
Max. P 0.703887
window11101

overview

Window 1

Location 16,854,232 – 16,854,337
Length 105
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 75.41
Mean single sequence MFE -19.57
Consensus MFE -6.06
Energy contribution -5.98
Covariance contribution -0.08
Combinations/Pair 1.28
Mean z-score -1.83
Structure conservation index 0.31
SVM decision value 0.36
SVM RNA-class probability 0.703887
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16854232 105 - 22224390
U-UUGAAUAAAUAUUUCAAAUAAAGUUUCAAC-------UCAUGACUAACAUUUAUUAAAAUUAAAGCUGCGCUUAAA-----GCUUAAAAGCUGUUAUCCUUGAGUUCAAGCUUUAA
(-(((((.......))))))((((((((.(((-------(((.((.((((..............((((...))))..(-----(((....))))))))))..)))))).)))))))). ( -23.40)
>DroSec_CAF1 52843 103 - 1
U-UUGAAUGAAUAUUUCAAAUAAAGUUG-AAA-------UCAUGACUAACAUUUACUUG-UCGAAAGCUGCGCCUAAA-----GCUUAAAAGCUGUUAUCCUUGACUUCAAGCUUUAA
(-(((((.......))))))((((((((-((.-------(((.((.(((((....(((.-....(((((........)-----))))..))).)))))))..))).))).))))))). ( -19.20)
>DroSim_CAF1 37281 116 - 1
UUUUGAAUUAAUAUUUCAAAUAAAGUGG-AUACAAUAGACGAUGACUAAAAUUUACUUG-GCGAAAGCUGUGCUUCAAUAGACAUUGAAAAGCUGUUAUCCUUGACUUCAAGCUUUAA
.((((((.......))))))((((((((-(((..((((.(((((.(((.........((-((....))))........))).))))).....)))))))))(((....))))))))). ( -22.93)
>DroEre_CAF1 38193 103 - 1
U-UUGAAUGUAUAUUUCAAAUAUAGUAG-AAA-------ACAUAACUGACAUCUCAUUC-ACGAAAGCUGCAUUCAAA-----ACUUUAAAGCUGUUAUCCCUAAGCUUCAACUUUAA
(-(((((((((..((((.......((..-...-------)).....(((....)))...-..))))..))))))))))-----......(((((..........)))))......... ( -15.20)
>DroYak_CAF1 37623 103 - 1
U-UUGAAUGCAUACUUUAAAUAUGGUUA-AAA-------ACAUAACUGACAUUGCAUUC-ACGAAAGCUGCGCUUGAA-----ACUUAAAAGCUGUUAUCCUUGACUUCAAACUUUAA
.-.((((((((....(((..((((....-...-------.))))..)))...)))))))-).(((......((((...-----......)))).((((....)))))))......... ( -17.10)
>consensus
U_UUGAAUGAAUAUUUCAAAUAAAGUUG_AAA_______ACAUGACUAACAUUUAAUUC_ACGAAAGCUGCGCUUAAA_____ACUUAAAAGCUGUUAUCCUUGACUUCAAGCUUUAA
..(((((.......))))).((((((....................................((.(((.((..((((........))))..)).))).)).(((....))))))))). ( -6.06 =  -5.98 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:43 2006