Locus 6774

Sequence ID X_DroMel_CAF1
Location 16,846,913 – 16,847,008
Length 95
Max. P 0.891306
window11094

overview

Window 4

Location 16,846,913 – 16,847,008
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 84.12
Mean single sequence MFE -17.58
Consensus MFE -14.22
Energy contribution -14.10
Covariance contribution -0.12
Combinations/Pair 1.15
Mean z-score -1.97
Structure conservation index 0.81
SVM decision value 0.97
SVM RNA-class probability 0.891306
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16846913 95 + 22224390
AAAACCUGAACCACUCAAAACCAUCCAAUGCCCCGCCACCCAAAAUGGGGUUUCUGCACAAUUGCGGAAUGA-AAAAAUUAUGCAAGUAGCACGAC
..............(((............((((((..........))))))(((((((....))))))))))-.....(..(((.....)))..). ( -17.30)
>DroSec_CAF1 45571 95 + 1
AAAACCUGAACCACUCAAAACCAUCCACUACCCCACCACCCAAAAUGGGGUUUCUGCACAAUUGCGGAAUGA-AAAAAUUAUGCAAGUAGAACGAC
.......................((.(((((((((..........))))))(((((((....)))))))...-............))).))..... ( -16.90)
>DroSim_CAF1 30234 95 + 1
NNNNNNNNNNNNNNNNNNNNCCAUCCACUACCCCACCACCCAAAAUGGGGUUUCUGCACAAUUGCGGAAUGA-AAAAAUUAUGCAAGUAGCACGAC
.............................((((((..........))))))(((((((....)))))))...-.....(..(((.....)))..). ( -16.80)
>DroEre_CAF1 31693 95 + 1
AAAACCUGAACCACUCAAAACC-CCCACUACCCCACCAUCCAAAGUGGGGUUUCUGCACAAUUGCGGAAUAGAAAAAAUUGUGAAAGUAGCACGAC
.....(((..............-......(((((((........)))))))(((((((....))))))))))......(((((.......))))). ( -22.00)
>DroYak_CAF1 30484 96 + 1
AAAACCUGAACCACUCAAAACCAUCCACUAACCCAGCACCCAAAAUGGGGUUUCUGCACAAUUGCGGAAUAAAACGAAUUAUGCAAGUAGCACGAC
...................................((((((.....)))..(((((((....)))))))............)))............ ( -14.90)
>consensus
AAAACCUGAACCACUCAAAACCAUCCACUACCCCACCACCCAAAAUGGGGUUUCUGCACAAUUGCGGAAUGA_AAAAAUUAUGCAAGUAGCACGAC
.............................((((((..........))))))(((((((....)))))))........................... (-14.22 = -14.10 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:37 2006