Locus 6773

Sequence ID X_DroMel_CAF1
Location 16,842,528 – 16,842,629
Length 101
Max. P 0.996115
window11093

overview

Window 3

Location 16,842,528 – 16,842,629
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 71.53
Mean single sequence MFE -29.84
Consensus MFE -10.66
Energy contribution -11.58
Covariance contribution 0.92
Combinations/Pair 1.10
Mean z-score -2.51
Structure conservation index 0.36
SVM decision value 2.65
SVM RNA-class probability 0.996115
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16842528 101 - 22224390
AUGCCGCUUUUCCAGUGGCGUCGCAAAGUGAGGGGGGGGGGGAAACCCGGGCUAAAGUCAGGUGUUGCCAAAACGCCAAAGAAAUCAUU-GCAAAGAACAAA
((((((((.....)))))))).(((..((((.......(((....))).(((....))).((((((.....)))))).......)))))-)).......... ( -32.70)
>DroSec_CAF1 40132 99 - 1
AUGCCGCUUUUCUAGAGGCGUUGCAUAAUGG--CGGGGGAAAAACCCCUGGCUAACGUCAGGUGUUGCCAAAACGCCAAAGAAAUCAUG-GCCAAGAACAAA
((((((((((....))))))..))))..(((--(((((......))))((((....))))((((((.....))))))............-))))........ ( -35.60)
>DroSim_CAF1 25985 82 - 1
AUGCCGCUUUUCCAG-------------------GGGGGAAAAACCCCUGGCUAAAGUCAGGUGUUGCCAAAACGCCAAAGAAAUCAUG-GCAAAGAACAAA
.(((((((((.((((-------------------(((.......)))))))..)))))..((((((.....))))))...........)-)))......... ( -32.60)
>DroEre_CAF1 27543 96 - 1
AUGCCGCUUUUCCAGGGUAGGCGGAAAGCU-----UGGGGGAAAUCCUAAUCGACAGUCAGGUGUUGCCAAAAC-CCAAAGAAUUCAUUUGCGCAGCCCAAA
...((((((..(....).))))))...(.(-----(((((....)))))).)........((.(((((((((..-............)))).)))))))... ( -23.44)
>DroYak_CAF1 25955 79 - 1
AUGGCGCUUUUCCAGGGGC------------------GGGGAAAACCUGGGCGACAGUCAGGUGUUGCCAAAACGCCAAAGUAAUCAUUG-----GCCCAAA
.(((.(((........(((------------------((((....))).(((((((......)))))))....))))............)-----))))).. ( -24.85)
>consensus
AUGCCGCUUUUCCAGGGGCG__G_A_A_______GGGGGGGAAAACCCGGGCUAAAGUCAGGUGUUGCCAAAACGCCAAAGAAAUCAUU_GCAAAGAACAAA
(((...((((.........................((((......))))(((....))).((((((.....))))))))))....))).............. (-10.66 = -11.58 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:36 2006