Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,836,694 – 16,836,788 |
Length | 94 |
Max. P | 0.505862 |
Location | 16,836,694 – 16,836,788 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 67.79 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -9.66 |
Energy contribution | -12.25 |
Covariance contribution | 2.59 |
Combinations/Pair | 1.21 |
Mean z-score | -1.65 |
Structure conservation index | 0.38 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16836694 94 - 22224390 UAG--------------------------AAAUAUCCACGAUUAUGUAUACUCGGUGGAUACAAUUGCGUCGCUCUGGCGCUUUCUUGGGAAGUAACCAAGAAGUAUGCAUCGGAUUUCA ..(--------------------------((..((((..((.((....)).))((((.((((....(((((.....))))).(((((((.......))))))))))).))))))))))). ( -29.40) >DroPse_CAF1 28687 77 - 1 -AG--------------------------ACCUCUCCACUUUUCUG---------UGACUGCAAAUAUA-------ACCUGUACCCUGCGAAGGGUAUCAAAAGUGUGCCCUGUAUUUUC -..--------------------------.......(((((((.((---------(....)))......-------....(((((((....))))))).))))))).............. ( -14.60) >DroSec_CAF1 34237 94 - 1 UAG--------------------------AAAUAUCCACGAUUAUGUAUACUCGGUGGAUACAAUUCCGUCGCUCUAGCGCUUUCUUGGGAAGUAACCAAGAAGUAUGCAUCGGAUUUCA ..(--------------------------((((.....(((...(((((((..(..(((......)))..)((....))...(((((((.......))))))))))))))))).))))). ( -27.90) >DroSim_CAF1 19713 94 - 1 UAG--------------------------AAAUAUCCACGGUUAUGUAUACUCGGUGGAUACAAUUCCGUCGCUCUAGCGCUUUCUUGGGAAGUAACCAAGAAGUAUGCAUCGGAUUUCA ..(--------------------------((((((((((.(...........).)))))))....((((..((......((((.(((((.......)))))))))..))..)))))))). ( -27.40) >DroEre_CAF1 22047 120 - 1 UAGGUACGUAGAUACGUAGAUACAUAGAUAUAUAACCAUAGAUAUGCAUACCCGGUGGAUAGAAUUGCGUCGCGCUGCCGGUUUCCUGGGAAGUUUCCAAGAAGUAUGCAUCGGAUUUCA ..(((((((....))))......(((....))).)))......((((((((((((..(...((......))...)..)))).(((.(((((...))))).)))))))))))......... ( -29.80) >DroYak_CAF1 20033 94 - 1 UAG--------------------------AAAUAUUCACGAUUAUCUAUACUCGGUGAAUACAAUUCAGUCGCUCUGCCGCUUCCUUUGGAAGUUCCCAAGAAGUGUGCAUCGGAUUUCA ..(--------------------------((((((((((((.((....)).)).)))))).........(((...(((((((((..((((......)))))))))).))).)))))))). ( -22.00) >consensus UAG__________________________AAAUAUCCACGAUUAUGUAUACUCGGUGGAUACAAUUCCGUCGCUCUACCGCUUUCUUGGGAAGUAACCAAGAAGUAUGCAUCGGAUUUCA ...................................................((((((.((((.........((......)).(((((((.......))))))))))).))))))...... ( -9.66 = -12.25 + 2.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:35 2006