| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,834,094 – 16,834,208 |
| Length | 114 |
| Max. P | 0.539159 |
| Location | 16,834,094 – 16,834,208 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 88.58 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -12.56 |
| Energy contribution | -12.56 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16834094 114 + 22224390 CCAUUAUUCUCAGCUGAUUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACUCCGACGUUCUUCAACUUUCUUCCACAUUUUGCCACACCUUCCAGC ............((((..((((.......))))......((((...(.(((..(((((......)))))..))).)...))))...........................)))) ( -19.70) >DroSec_CAF1 31620 114 + 1 CCAUUAUUCUCAGCUGAUUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACUCCGACUUUCUUCAGCUUUCUCCCACAUUCUGCCACACCUUCCAUU ...........((((((.((((.......)))).)))...(((...(((((..(((((......)))))..)))))...))))))............................. ( -21.50) >DroSim_CAF1 17107 114 + 1 CCAUUAUUCUCAGCUGAUUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACUCCGACUUUCUUCAGCUUUCUCCCUCAUUCUGCCACACCUUCCAGU ...........((((((.((((.......)))).)))...(((...(((((..(((((......)))))..)))))...))))))............................. ( -21.50) >DroEre_CAF1 19520 104 + 1 CCAUUAUUCUCAGCUGAUUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACU----------UCAACACCCUCCCACAUUCUGCCACACCUUCCGCU ...........((((((.((((.......)))).)))..((((.(((((..(.......)..)))))..----------))))............................))) ( -15.20) >DroYak_CAF1 17348 98 + 1 CCAUUAUUCUCAGCUGAUUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACU----------U------UCUCCCACAUUCUGCCACACCUUCCAAU .........((((.(((.((((.......)))).))).).)))....((....(((((......)))))----------.------...))....................... ( -14.70) >consensus CCAUUAUUCUCAGCUGAUUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACUCCGAC_UUCUUCAACUUUCUCCCACAUUCUGCCACACCUUCCAGU .........((((.(((.((((.......)))).))).).)))..........(((((......)))))............................................. (-12.56 = -12.56 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:33 2006