| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,875,018 – 1,875,135 |
| Length | 117 |
| Max. P | 0.500000 |
| Location | 1,875,018 – 1,875,135 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.76 |
| Mean single sequence MFE | -35.03 |
| Consensus MFE | -26.53 |
| Energy contribution | -27.53 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1875018 117 - 22224390 AUAUAUA---UUUAAGUAUUCUAUAUUUCUGGCAUUGUACUUACUGGCUAGGAUCUUCUGCUGGCGCUCCACGGACUUUAUUUGUCCAACAUGGCAGGGGGUGUCAUAGAGGCCAAACUU .......---...((((.........(((((((...((....))..))))))).((((((.(((((((((..((((.......))))..(......))))))))))))))))....)))) ( -33.30) >DroSim_CAF1 401 117 - 1 AUCUAUA---UUCAAGUAUUUGAUCUUUCCGGCACUGUACUUACUGGCUAGGAUCUUCUGCUGGCGCUCCACGGACUUUAUUUGUCCAACAUGGCAGGGGGUGUCAUAGAGUCCAAACUU .(((((.---....((((...((((((.((((...........))))..))))))...))))((((((((..((((.......))))..(......)))))))))))))).......... ( -32.80) >DroYak_CAF1 373 120 - 1 AUCUAUACUACUCAAGUAGUUGAUCUUUCUGGCAGUGUACUCACUGGCUAAGAUCUUCUGCUGGCGCUCCACGGACUUUAUUUGUCCAACAUGGCAGGGUGUGUCAUAGAGUCCAAACUU .........((((.(((((..((((((...(.(((((....))))).).))))))..)))))(((((.((..((((.......))))..(......))).)))))...))))........ ( -39.00) >consensus AUCUAUA___UUCAAGUAUUUGAUCUUUCUGGCACUGUACUUACUGGCUAGGAUCUUCUGCUGGCGCUCCACGGACUUUAUUUGUCCAACAUGGCAGGGGGUGUCAUAGAGUCCAAACUU .............((((.........(((((((...((....))..)))))))..(((((.(((((((((..((((.......))))..(......))))))))))))))).....)))) (-26.53 = -27.53 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:54 2006