Locus 6769

Sequence ID X_DroMel_CAF1
Location 16,831,824 – 16,831,914
Length 90
Max. P 0.547243
window11088

overview

Window 8

Location 16,831,824 – 16,831,914
Length 90
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 82.65
Mean single sequence MFE -24.29
Consensus MFE -18.02
Energy contribution -18.08
Covariance contribution 0.06
Combinations/Pair 1.16
Mean z-score -1.43
Structure conservation index 0.74
SVM decision value 0.03
SVM RNA-class probability 0.547243
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16831824 90 - 22224390
CCCCCAGGGUUUUCGGUCAACUUUUGUGUGACUUUUGUGG----ACCCCCAGCUCC-----UCGGCUGAUGUCAUAAAGAAGUUGCCUUUUCUUUGCUC
....(((((.....((.((((((((.((((((......((----...))(((((..-----..)))))..)))))).))))))))))....)))))... ( -24.80)
>DroSec_CAF1 29378 90 - 1
CCCUCAGGGUUUUCGGUCAACUUUUGUGUGACUUUUGUGC----ACCCCCAGCUCC-----UCGGCUGAUGUCAUAAAGAAGUUGCCUUUUCUUUGCUC
....(((((.....((.((((((((.((((((....(...----.)...(((((..-----..)))))..)))))).))))))))))....)))))... ( -23.30)
>DroSim_CAF1 14826 90 - 1
CCCCCAGGGUUUUCGGUCAACUUUUGUGUGACUUUUGUGG----ACCCCCAGCUCC-----UCGGCUGAUGUCAUAAAGAAGUUGCCUUUUCUUUGCUC
....(((((.....((.((((((((.((((((......((----...))(((((..-----..)))))..)))))).))))))))))....)))))... ( -24.80)
>DroEre_CAF1 17211 89 - 1
GCCCCGGGGUU-UUGGUCAACUUUUGUGUGACUUUUGUGG----ACCCCCAGCUCC-----UCGGCUGAUGUCAUAAAGAAGUUGCCUUUUCUGUGCUU
((..(((((..-..((.((((((((.((((((......((----...))(((((..-----..)))))..)))))).))))))))))..))))).)).. ( -26.60)
>DroYak_CAF1 15236 90 - 1
CCCUCGGGGUUUUUGGUCAACUUUUGUGUGACUUUUGCGG----ACCCCCAGCUCG-----UCGGCUGAUGUCAUAAAGAAGUUGCCUUUCCUUUGCUC
.....((((.....((.((((((((.((((((.((.((.(----((.........)-----)).)).)).)))))).))))))))))...))))..... ( -27.30)
>DroPer_CAF1 19038 93 - 1
UCUUCGGGGCCUCCGGUCAACUUUU-CGUGACUCGCGGCAGCCCUCCCCCCGCACCUGCCCACUGCUGAUGUCAUAAAGAACUUUUCUUUUC-----CC
.....((((((...))))...((((-..((((...((((((..........((....))...))))))..))))..))))...........)-----). ( -18.92)
>consensus
CCCCCAGGGUUUUCGGUCAACUUUUGUGUGACUUUUGUGG____ACCCCCAGCUCC_____UCGGCUGAUGUCAUAAAGAAGUUGCCUUUUCUUUGCUC
.((....)).....((.((((((((.((((((....((......))...(((((.........)))))..)))))).))))))))))............ (-18.02 = -18.08 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:32 2006