Locus 6768

Sequence ID X_DroMel_CAF1
Location 16,828,581 – 16,828,678
Length 97
Max. P 0.619125
window11087

overview

Window 7

Location 16,828,581 – 16,828,678
Length 97
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 84.02
Mean single sequence MFE -27.68
Consensus MFE -19.32
Energy contribution -20.36
Covariance contribution 1.04
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.70
SVM decision value 0.17
SVM RNA-class probability 0.619125
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16828581 97 - 22224390
-----------CCUGACCCCUGUGCACUUGGGCUCAAGCUGGAACAGCAACACGACAGCAGCCACUUGAUAUUUGGACUUCAGCGCAGAUAGUAUAAGUUCAAAGCCA
-----------...................((((((((.(((....((.........))..))))))))..(((((((((..((.......))..)))))))))))). ( -21.50)
>DroSec_CAF1 26166 97 - 1
-----------CCUGACCCCCGUGCACUUGGGCUCAAGUUGGAACAGCAACACGACAGCAGCCACUUGAUAUUUGGGCUUCAGCCCGGUUAGUAUAAGUUCAAAACCA
-----------.((((((((((......)))).((((((.((....((.........))..)))))))).....((((....))))))))))................ ( -27.20)
>DroSim_CAF1 11614 97 - 1
-----------CCUGACCCCCGUGCACUUGGGCUCAAGUUGGAACAGCAACACGACAGCAGCCACUUGAUAUUUGGGCUUCAGCCCGGUUAGUAUAAGUUCAAAACCA
-----------.((((((((((......)))).((((((.((....((.........))..)))))))).....((((....))))))))))................ ( -27.20)
>DroEre_CAF1 14247 97 - 1
-----------CCUGACCCCCAUCCACUUGGCCUCAAGUUGGAACAGCAACACGACAGCAGCCACUUGAUAUUUGGGCUUCGGCCCGGAUAACACAAGUUCAAAACCA
-----------..............(((((...((((((.((....((.........))..))))))))(((((((((....)))))))))...)))))......... ( -27.90)
>DroYak_CAF1 11328 108 - 1
UAUAAUUUCAAUUUAAAUGCCAGCUACUGGCGCUCAAGUUGAAACAGCAACACGACAGCAGCCACUUGAUAUUUGGGCUUCGGCCCGGAUAAUAUAAGUUGAAAACCG
.....((((((((((...(((((...)))))..((((((.(.....((.........))..).))))))(((((((((....)))))))))...)))))))))).... ( -34.60)
>consensus
___________CCUGACCCCCGUGCACUUGGGCUCAAGUUGGAACAGCAACACGACAGCAGCCACUUGAUAUUUGGGCUUCAGCCCGGAUAGUAUAAGUUCAAAACCA
......................((.(((((...(((((.(((....((.........))..))))))))(((((((((....)))))))))...))))).))...... (-19.32 = -20.36 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:31 2006