Locus 6763

Sequence ID X_DroMel_CAF1
Location 16,800,811 – 16,800,905
Length 94
Max. P 0.759180
window11075

overview

Window 5

Location 16,800,811 – 16,800,905
Length 94
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 78.63
Mean single sequence MFE -22.47
Consensus MFE -18.38
Energy contribution -19.22
Covariance contribution 0.84
Combinations/Pair 1.05
Mean z-score -1.40
Structure conservation index 0.82
SVM decision value 0.50
SVM RNA-class probability 0.759180
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16800811 94 - 22224390
UUCCGCGAAUUUGUUUUUCCUCGGCGCCGUGCCUUGCUGCGCCAAGUUUUCCUUUCAAUUGGCCAGCCAAGUUUCAAGUUUGCCAGCUCGAAAA--------------------
....(((((((((.........(((.....)))..((((.(((((.............))))))))).......)))))))))...........-------------------- ( -24.82)
>DroSec_CAF1 8128 89 - 1
UUCCGCGAAUUUGUUUUUCCUCGGCGGCGUGCCUUGCUGCGCCAAGUUUUCCUUUCAAUUGGCCA-----GUUUCAAGCUUGCCAGUUCAAAAA--------------------
..(((.(((.......)))..))).(((((((...)).))))).........(((.(((((((.(-----((.....))).))))))).)))..-------------------- ( -22.10)
>DroSim_CAF1 9979 89 - 1
UUCCGCGAAUUUGUUUUUCCUCGGCGGCAUGCCUUGCUGCGCCAAGUUUUCCUUUCAAUUGGCCA-----GUUUCAAGUUUGCCAGUUCAAAAA--------------------
....(((((((((..........((((((.....))))))(((((.............)))))..-----....)))))))))...........-------------------- ( -23.92)
>DroEre_CAF1 9926 107 - 1
UUCCGCGAAUUCGUUUUUCCUCUGCGCCGUGCUUUGCUGCACCAAGUUUUCCUUUCAAUUGGCU-------CUUCAAGUUUGCCAGCUCAAAAAUGACCACCCCCUUAUCCGCC
....(((.((((((((((.....((...((((......)))).................((((.-------..........))))))..))))))))..........)).))). ( -16.90)
>DroYak_CAF1 9598 107 - 1
UUCCGCGAAUUUGUUUUUCCUAUGCGGCGUGCUUUGCUGCGCCAAGUUUUCCUUUCAAUUGGCU-------CUCCAAGUUUGCCAGCUCAAAACGCAACACCCCCUUAUCAGCC
....(((((((((..........((((((.....))))))(((((.............))))).-------...)))))))))..((.......)).................. ( -24.62)
>consensus
UUCCGCGAAUUUGUUUUUCCUCGGCGGCGUGCCUUGCUGCGCCAAGUUUUCCUUUCAAUUGGCCA_____GUUUCAAGUUUGCCAGCUCAAAAA____________________
....(((((((((..........((((((.....))))))(((((.............)))))...........)))))))))............................... (-18.38 = -19.22 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:21 2006