Locus 6762

Sequence ID X_DroMel_CAF1
Location 16,793,000 – 16,793,114
Length 114
Max. P 0.556991
window11074

overview

Window 4

Location 16,793,000 – 16,793,114
Length 114
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 70.67
Mean single sequence MFE -40.58
Consensus MFE -17.16
Energy contribution -15.99
Covariance contribution -1.17
Combinations/Pair 1.48
Mean z-score -1.70
Structure conservation index 0.42
SVM decision value 0.05
SVM RNA-class probability 0.556991
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16793000 114 - 22224390
UGGUC---GGUGGCUUGGCUCAAUUCGAGCGGAGCGUGCAGCUCAUCAAGAAUCCUCCUAGACUGCAUGCUGACUACAUCGAAGGAAUUGAAUUCCUUAAAAAAGCCCUGCUAAAUA
(((.(---((.(((((.((((.....))))..(((((((((.((....((....))....)))))))))))..........(((((((...)))))))....))))))))))).... ( -36.20)
>DroPse_CAF1 364 111 - 1
UAAUU---GGCGAUCUGGCUCAGUUCGAGCGUAGUGUGCAGCUGAUCGCGAAGCCGC---AGCUGCACGCCACUUGUAUGGAGGUGAUGACCUCCUUCAACAAGGCGCUGCAAAAUG
.....---.((((.(((...))).)).(((((.(((((((((((...((...))..)---))))))))))..(((((..((((((....))))))....))))))))))))...... ( -46.50)
>DroSec_CAF1 394 114 - 1
UGGUC---GGUGGCAUGGCUCAAUACGAGCGGAGCGUGCAGCUCAUCAAGAAUCCUCCUAGGUUGCAUGGUGACUACAUGGAAGGGAUAGAAUUCCUAAAAAAAGCCCUGCUAAAUA
(((.(---((.(((...((((.....))))....((((.((.((((((.(...((.....))...).)))))))).))))...((((......)))).......))))))))).... ( -32.50)
>DroSim_CAF1 1792 114 - 1
UGGUC---GGUGGCAUGGCUCAAUACGAGCGGAGCGUGCAGCUCAUCACGAAUCCUCGUAGGUUGCAUGGUGACUACAUGGAAGGGAUAGAAUUCCUUAAAAAAGCCCUGCUAAAUA
(((.(---((.((((((((((.....))))..(.(((((((((....((((....)))).))))))))).).....)))...(((((......)))))......))))))))).... ( -35.40)
>DroAna_CAF1 3296 117 - 1
UCGGCGGCGCCGACAGGGCCCAGUUCGAGCGGAGCGUCCAGCUGAUCCACGAUCCCCCGAAGCUCCACAGCCACUGGUUCGACGUGAUGGGCGGCUUCAACAAGGCCCUGGGCAACG
(((((...)))))(((((((..(((.((((((.....)).(((.(((.(((.((..(((..(((....)))...)))...)))))))).))).)))).)))..)))))))(....). ( -46.40)
>DroPer_CAF1 364 111 - 1
UAAUU---GGCGAUCUGGCUCAGUUCGAGCGUAGUGUGCAGCUGAUCGCGAAGCCGC---AGCUGCACGCCACUUGUAUGGAGGUGAUGACCUCCUUCAACAAGGCGCUGCAAAAUG
.....---.((((.(((...))).)).(((((.(((((((((((...((...))..)---))))))))))..(((((..((((((....))))))....))))))))))))...... ( -46.50)
>consensus
UGGUC___GGCGACAUGGCUCAAUUCGAGCGGAGCGUGCAGCUCAUCAAGAAUCCUCCUAAGCUGCACGCCGACUACAUGGAAGGGAUGGAAUUCCUCAAAAAAGCCCUGCUAAAUA
.........((((....((((.....))))....(((((((((.................)))))))))....)))).....((((...................))))........ (-17.16 = -15.99 +  -1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:20 2006