Locus 6760

Sequence ID X_DroMel_CAF1
Location 16,782,438 – 16,782,535
Length 97
Max. P 0.872033
window11071

overview

Window 1

Location 16,782,438 – 16,782,535
Length 97
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 78.51
Mean single sequence MFE -26.38
Consensus MFE -15.59
Energy contribution -17.21
Covariance contribution 1.62
Combinations/Pair 1.08
Mean z-score -2.15
Structure conservation index 0.59
SVM decision value 0.87
SVM RNA-class probability 0.872033
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16782438 97 + 22224390
AGCACAAGACGUUACCUGUGAAAC---UCAAGCAGGUCACUACUGAAAUUCCAAGGGGAUACCUGUAAGAUUAAAUAAUCUACGGGUUAAAUAACUUCAC
..........((.((((((.....---....)))))).))...(((((((((...)))))(((((((.((((....)))))))))))........)))). ( -21.80)
>DroSec_CAF1 395 97 + 1
AGUACAAGAGGUAACCUGGGAAAC---UCAAGCAGGUAACUACUGAAAUUCCAAGGGGAUACCUGUAAGAGUAAAUAAUGUACGGAUUGAGUCAUCUCAC
.(((((..(((...))).....((---((..(((((((.(..((.........))..).)))))))..))))......)))))....((((....)))). ( -25.00)
>DroEre_CAF1 5959 95 + 1
AGUAAAAGAGGUUACCUGGGCAGU---UCAAGCAGGUAACUGCUGGAAUUCCAACGGAAUACCUGUAAGAAUGUAUCUUCUACGGGCUAAAUCCGUUA--
.((((......))))...((.(((---((.(((((....))))).)))))))((((((...((((((.(((......))))))))).....)))))).-- ( -29.10)
>DroYak_CAF1 398 100 + 1
AGUACAAGAGGUUACCUGGGCGGUAACUCGGGCAGGUAACUGCUGAAAUUCCAAGGGCUUACCUGUAAGAAUAUAUCUUCUACGGGUUAAAUCCGCUAAC
(((...((.(((((((((..(((....)))..))))))))).))..........((..(((((((((.(((......))))))))).)))..)))))... ( -29.60)
>consensus
AGUACAAGAGGUUACCUGGGAAAC___UCAAGCAGGUAACUACUGAAAUUCCAAGGGGAUACCUGUAAGAAUAAAUAAUCUACGGGUUAAAUCAGCUAAC
......((.(((((((((..............))))))))).))...(((((...))))).((((((.(((......))))))))).............. (-15.59 = -17.21 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:17 2006