Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,873,858 – 1,873,959 |
Length | 101 |
Max. P | 0.680627 |
Location | 1,873,858 – 1,873,959 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 80.48 |
Mean single sequence MFE | -42.92 |
Consensus MFE | -26.46 |
Energy contribution | -26.72 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.25 |
Mean z-score | -1.79 |
Structure conservation index | 0.62 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.680627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1873858 101 + 22224390 AGCUGAACAGGAGCAGCAACGGAGGAGUAAGCGGUAGUGGCGGCCUGCCUACUGGUACAGUUAUCCAUGGAGGCUGUGGCUCCUCUUCAGCUUCUUCCACG .((((........))))...(((((((((((.((.(((.(((((((.((...(((.........))).))))))))).))))).)))..)).))))))... ( -39.40) >DroPse_CAF1 3412 92 + 1 AGCUCAAUCGGAGCAGCAACGGGGGAGCCAGCGGAAGUGGCGGAGUGCCCACGGGGACUGUCAUCCACGG---CAGCGGCUCCUCC---GGC---UCCUCA .........(((((.....((((((((((.((.(..((((.(.(((.((....)).))).)...))))..---).)))))))))))---)))---)))... ( -45.10) >DroSec_CAF1 11171 101 + 1 AGCUGAACAGGAGCAGCAACGGAGGAGUGAGCGGUAGUGGCGGCUUGCCUACUGGUACAGUUAUCCAUGGGGGCUGUGGCUCCUCUUCCGCUUCUUCCACG .((((........))))...((((((...(((((.((.((.((((.(((..((((.........))).)..)))...)))))).)).)))))))))))... ( -40.00) >DroEre_CAF1 9830 101 + 1 AGCUGAACAGGAGCAGCAAUGGAGGAGUGGGCGGUAGUGGCGGCCUGCCUACUGGUACAGUUAUCCAUGGGGGCAGCGGCUCCUCCUCUGCUUCUUCCACG ........((((((((....((((((((.(((.((....)).))(((((..((((.........))).)..)))))).)))))))).))))))))...... ( -43.00) >DroYak_CAF1 11966 101 + 1 AGUUGAACAGGAGCAGCAAUGGAGGAGUGGGCGGUAGUGGCGGCCUGCCAACUGGUACAGUUAUCCAUGGUGGCAGCGGCUCCUCCUCCGCAUCCUCCACG .((((........))))..((((((((((((.((.((..((.((.(((((..(((.........)))...))))))).))..))))))))).))))))).. ( -44.90) >DroPer_CAF1 3400 92 + 1 AGCUCAAUCGGAGCAGCAACGGGGGAGCCAGCGGAAGUGGCGGAGUGCCCACGGGGACUGUCAUCCACGG---CAGCGGCUCCUCC---GGC---UCCUCA .........(((((.....((((((((((.((.(..((((.(.(((.((....)).))).)...))))..---).)))))))))))---)))---)))... ( -45.10) >consensus AGCUGAACAGGAGCAGCAACGGAGGAGUGAGCGGUAGUGGCGGCCUGCCUACUGGUACAGUUAUCCAUGG_GGCAGCGGCUCCUCCUC_GCUUCUUCCACG .........((((..((...((((((((..((.((.((((.(((..(((....)))...)))..))))....)).)).))))))))...))...))))... (-26.46 = -26.72 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:53 2006