| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,781,793 – 16,781,913 |
| Length | 120 |
| Max. P | 0.645522 |
| Location | 16,781,793 – 16,781,913 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.78 |
| Mean single sequence MFE | -33.83 |
| Consensus MFE | -29.41 |
| Energy contribution | -29.70 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16781793 120 + 22224390 UUGAAAGCGGAAAGUGAAAGCGCAUCUGUGAGUGGGGGAAAAACUAAUGAUGAUCGAAGAGGCGAACCUUGUUGGUCGUUCGAGAAGAAAUGCAAACACGUGUCUUUAAUUUCCGCACUC ......(((((..((....))...)))))(((((.(((((........(((((((((.((((....)))).)))))))))...(((((.(((......))).)))))..))))).))))) ( -36.60) >DroSec_CAF1 18703 120 + 1 UUGAAAGCGGAAAGUGAAAGCGCAUCUGUGAGUGGGGGAAAAACUAAUGAUGAUCGAAGAGGUGAACCUUGUUGGUCGUUCGAGAAGAAAUGCAAACACGUGUCUUUAAUAUCCGCACUC ......(((((..((....))...)))))(((((.(((..........(((((((((.((((....)))).)))))))))...(((((.(((......))).)))))....))).))))) ( -36.70) >DroYak_CAF1 18559 117 + 1 UUGAAAGCGGAAAGUGAAAGCGCAUCUGUGAGUGGGGGAAAAAUUAAU---GAUCGAAGAGGCGAAUAUUGUUGGUCGCUCGUAAGGAAAUGCAAACACGUGUCUUUAAUUUUCGCACUC ......(((((..((....))...)))))(((((.(..((......((---((.(((...(((((...)))))..))).))))(((((.(((......))).)))))..))..).))))) ( -28.20) >consensus UUGAAAGCGGAAAGUGAAAGCGCAUCUGUGAGUGGGGGAAAAACUAAUGAUGAUCGAAGAGGCGAACCUUGUUGGUCGUUCGAGAAGAAAUGCAAACACGUGUCUUUAAUUUCCGCACUC ......(((((..(((....))).)))))(((((.(((((...........((((((.((((....)))).))))))......(((((.(((......))).)))))..))))).))))) (-29.41 = -29.70 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:17 2006