Locus 6758

Sequence ID X_DroMel_CAF1
Location 16,780,356 – 16,780,476
Length 120
Max. P 0.866380
window11069

overview

Window 9

Location 16,780,356 – 16,780,476
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -29.83
Consensus MFE -26.90
Energy contribution -27.57
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.90
SVM decision value 0.85
SVM RNA-class probability 0.866380
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16780356 120 + 22224390
AGCCACUAUAAAUACGAACGAUAUCUGGACAGAACGUGUAUAUAGAGAGUGUUUUAUACUAUACUAUCUAUAUGCACUGGGUACAAUUCACGAGUAUCUCACCACACGAAAGUGUGACAC
.(((...................(((....)))..(((((((((((.(((((........))))).)))))))))))..))).........(((...)))..(((((....))))).... ( -33.30)
>DroSec_CAF1 17242 120 + 1
AGCCACUAUAAAUACGAACGAUAUCUGGACAGAACGUGUAUAUAGAGAGUGUUUUAUACUAUACUGACUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUGUGACAC
...................((((.((.(...(((.((((((((((..(((((........)))))..))))))))))((....)).))).).))))))....(((((....))))).... ( -31.80)
>DroYak_CAF1 17115 120 + 1
AACCACUAUAAAUACGAACGAUAUCUGGACAAAACGUGUAUAUAGAGAGUGUUUUAUACUAUACGAGCUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUAUGACAC
.........................(((.......((((((((((...((((........))))...)))))))))).((((((.........))))))..))).((....))....... ( -24.40)
>consensus
AGCCACUAUAAAUACGAACGAUAUCUGGACAGAACGUGUAUAUAGAGAGUGUUUUAUACUAUACUAACUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUGUGACAC
...................((((..((((......((((((((((..(((((........)))))..))))))))))((....))..)).))..))))....(((((....))))).... (-26.90 = -27.57 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:16 2006