Locus 675

Sequence ID X_DroMel_CAF1
Location 1,872,785 – 1,872,879
Length 94
Max. P 0.934112
window1086

overview

Window 6

Location 1,872,785 – 1,872,879
Length 94
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 75.40
Mean single sequence MFE -19.42
Consensus MFE -9.32
Energy contribution -9.36
Covariance contribution 0.03
Combinations/Pair 1.41
Mean z-score -2.25
Structure conservation index 0.48
SVM decision value 1.23
SVM RNA-class probability 0.934112
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1872785 94 - 22224390
UUCAGAAAUGUCUUCAGCUUUAGGUUCUAACUUAGCAGGAGCCUUCUUUGCUGCCUUUAGCCCUGAUUUCUGAUUCUUU-----UCCUGCUCCUCUUUC
.(((((((((.((.((((...(((((((.........))))))).....)))).....)).)...))))))))......-----............... ( -18.30)
>DroPse_CAF1 2168 90 - 1
-UCGGCGGCGGCCGCGGCCUUAACUUCUCCCUCGGCUUCCGCCUCCAGUUCUGUCUCGGACUCCGGC--------UUUAUCAGCUCCAGCUCCACUUCA
-..(((((.(((((.((............)).))))).)))))..............(((((..(((--------(.....))))..)).)))...... ( -28.80)
>DroSec_CAF1 10110 94 - 1
UUCAGAAAUGUCUUCAGCUUUAGGUUCUAAUUUAGCAGAAGCCUUCUUUCCCGCCUUUGGCCCUGAUUUCUGAUUUUUA-----UCCUGCUCCUCUUUC
.((((((..(((....(((..((((.........((....))..........))))..)))...)))))))))......-----............... ( -15.41)
>DroSim_CAF1 5358 94 - 1
UUCAGAAAUAUCUUCAGCUUUAGGUUCUAAUUUAGCAGAAGCCUUCUUUCCCGCCUUUGGCCCUGAUUUCUGAUUUUUA-----UCCUGCUCCUCUUUC
.((((((((.......(((..((((.........((....))..........))))..)))....))))))))......-----............... ( -15.71)
>DroEre_CAF1 8721 94 - 1
UUCAGAUAUGUCUUCAGCUUUAUGUUCUAAUUGAGCUGAAGCCUUCUUUCCUGCUUUUGACCCUGAUUUCUGAUUCUUA-----UCAUGCUCCUCUUCC
.(((((...(((((((((((.((......)).))))))))((..........))..........))).)))))......-----............... ( -16.20)
>DroYak_CAF1 10848 94 - 1
UUCAGAAAUGUCUUCAGCUUUAGGUCCUAAUUGAGCAGGAGCCUUCUUUCCCGCUUUUGGUCCUAAUUUCUGAUUCUUA-----UCCUGCUCCUCUUCC
.((((((((((.....))..((((.((.....((((.((((......)))).))))..)).))))))))))))......-----............... ( -22.10)
>consensus
UUCAGAAAUGUCUUCAGCUUUAGGUUCUAAUUUAGCAGAAGCCUUCUUUCCCGCCUUUGGCCCUGAUUUCUGAUUCUUA_____UCCUGCUCCUCUUCC
.((((((((..((((.(((..............))).))))...........((.....))....)))))))).......................... ( -9.32 =  -9.36 +   0.03) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:52 2006