Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,872,785 – 1,872,879 |
Length | 94 |
Max. P | 0.934112 |
Location | 1,872,785 – 1,872,879 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 75.40 |
Mean single sequence MFE | -19.42 |
Consensus MFE | -9.32 |
Energy contribution | -9.36 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.41 |
Mean z-score | -2.25 |
Structure conservation index | 0.48 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.934112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1872785 94 - 22224390 UUCAGAAAUGUCUUCAGCUUUAGGUUCUAACUUAGCAGGAGCCUUCUUUGCUGCCUUUAGCCCUGAUUUCUGAUUCUUU-----UCCUGCUCCUCUUUC .(((((((((.((.((((...(((((((.........))))))).....)))).....)).)...))))))))......-----............... ( -18.30) >DroPse_CAF1 2168 90 - 1 -UCGGCGGCGGCCGCGGCCUUAACUUCUCCCUCGGCUUCCGCCUCCAGUUCUGUCUCGGACUCCGGC--------UUUAUCAGCUCCAGCUCCACUUCA -..(((((.(((((.((............)).))))).)))))..............(((((..(((--------(.....))))..)).)))...... ( -28.80) >DroSec_CAF1 10110 94 - 1 UUCAGAAAUGUCUUCAGCUUUAGGUUCUAAUUUAGCAGAAGCCUUCUUUCCCGCCUUUGGCCCUGAUUUCUGAUUUUUA-----UCCUGCUCCUCUUUC .((((((..(((....(((..((((.........((....))..........))))..)))...)))))))))......-----............... ( -15.41) >DroSim_CAF1 5358 94 - 1 UUCAGAAAUAUCUUCAGCUUUAGGUUCUAAUUUAGCAGAAGCCUUCUUUCCCGCCUUUGGCCCUGAUUUCUGAUUUUUA-----UCCUGCUCCUCUUUC .((((((((.......(((..((((.........((....))..........))))..)))....))))))))......-----............... ( -15.71) >DroEre_CAF1 8721 94 - 1 UUCAGAUAUGUCUUCAGCUUUAUGUUCUAAUUGAGCUGAAGCCUUCUUUCCUGCUUUUGACCCUGAUUUCUGAUUCUUA-----UCAUGCUCCUCUUCC .(((((...(((((((((((.((......)).))))))))((..........))..........))).)))))......-----............... ( -16.20) >DroYak_CAF1 10848 94 - 1 UUCAGAAAUGUCUUCAGCUUUAGGUCCUAAUUGAGCAGGAGCCUUCUUUCCCGCUUUUGGUCCUAAUUUCUGAUUCUUA-----UCCUGCUCCUCUUCC .((((((((((.....))..((((.((.....((((.((((......)))).))))..)).))))))))))))......-----............... ( -22.10) >consensus UUCAGAAAUGUCUUCAGCUUUAGGUUCUAAUUUAGCAGAAGCCUUCUUUCCCGCCUUUGGCCCUGAUUUCUGAUUCUUA_____UCCUGCUCCUCUUCC .((((((((..((((.(((..............))).))))...........((.....))....)))))))).......................... ( -9.32 = -9.36 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:52 2006