Locus 6748

Sequence ID X_DroMel_CAF1
Location 16,761,917 – 16,762,034
Length 117
Max. P 0.539006
window11039

overview

Window 9

Location 16,761,917 – 16,762,034
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.68
Mean single sequence MFE -13.89
Consensus MFE -13.49
Energy contribution -13.55
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.28
Structure conservation index 0.97
SVM decision value 0.01
SVM RNA-class probability 0.539006
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16761917 117 - 22224390
GUCCAAUUAAUUGCAUAUUAGGCGGUAUCAAAAACUAUUAUUCAGGCCCCUCAACUGAAGCGACAAAACACAAUGAAACCCCUGACGACACAAAAAAAA---AAAUAAAUGAAAAACACU
((((((....)))....(((((.(((.(((..........(((((.........)))))(.(......).)..))).)))))))).)))..........---.................. ( -15.10)
>DroSec_CAF1 48666 112 - 1
GUCCAAUUAAUUGCAUAUUAGGCGGUAUCAAAAACUAUUAUUCAGGCCCCUCAACUGAAGCGACAAAACACAAUGAAACCCCUGACGACACAAAAAAAA---AAAA-----AAAAACACU
((((((....)))....(((((.(((.(((..........(((((.........)))))(.(......).)..))).)))))))).)))..........---....-----......... ( -15.10)
>DroSim_CAF1 46607 110 - 1
GUCCAAUUAAUUGCAUAUUAGGCGGUAUCAAAAACUAUUAUUCAGGCCCCUCAACUGAAGCGACAAAACACAAUGAAACCCCUGACGACACAAAAAAA-----AAA-----AAAAACACU
((((((....)))....(((((.(((.(((..........(((((.........)))))(.(......).)..))).)))))))).))).........-----...-----......... ( -15.10)
>DroYak_CAF1 40912 115 - 1
GUCCAAUUAAUUGCAUAUUAGGCGGUAUCCAAAACUAUUAUUCAGGCCCCUCAACUGAAGCGACAAAACACAAUGAAACCUCUGACGACACAACAAAACACUAAAA-----AAAAACACU
((((((....)))....(((((.(((.((...........(((((.........)))))...............)).)))))))).))).................-----......... ( -10.27)
>consensus
GUCCAAUUAAUUGCAUAUUAGGCGGUAUCAAAAACUAUUAUUCAGGCCCCUCAACUGAAGCGACAAAACACAAUGAAACCCCUGACGACACAAAAAAAA___AAAA_____AAAAACACU
((((((....)))....(((((.(((.(((..........(((((.........)))))(.(......).)..))).)))))))).)))............................... (-13.49 = -13.55 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:50 2006