Locus 6740

Sequence ID X_DroMel_CAF1
Location 16,758,221 – 16,758,341
Length 120
Max. P 0.935554
window11021

overview

Window 1

Location 16,758,221 – 16,758,341
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.53
Mean single sequence MFE -38.20
Consensus MFE -31.19
Energy contribution -32.62
Covariance contribution 1.44
Combinations/Pair 1.13
Mean z-score -2.40
Structure conservation index 0.82
SVM decision value 1.25
SVM RNA-class probability 0.935554
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16758221 120 - 22224390
CGCUGAGGCGAGGAGUGGAUUCGGCUCGAUAAGAUUAGUCGGUUCCAGCUCCAACAACAUAUGCAACGGCUAUUUAUUGUCUCCAUUUGGACGCGGCAAUAGUCGUUCCAUAAAUUCUAA
(((....))).((((((((..(((((..........)))))..)))).)))).......((((.((((((((((..((((.(((....))).)))).)))))))))).))))........ ( -40.40)
>DroSec_CAF1 45134 120 - 1
CGCUGAAGCGAGGAGUGGAUCCGGCUCGAUAAGAUUAGUCGGUUCCAGCUCCAACAACAUAUACAACGGCUAUUUAUUGUCUCUAUUUGGACGCGGCAAUAGUCGUUCCAUAAACUCUAA
(((....))).((((((((.((((((..........)))))).)))).)))).......(((..((((((((((...(((((......)))))....))))))))))..)))........ ( -36.90)
>DroEre_CAF1 36553 118 - 1
CACUGAAGUUAAGAGUGGAUGCGGGUCGAUAAGAUUAGUCGGUUCCAGCUCCAACGACAUAUGCAAUGGCUAUUUAUUGUCUCCAUUUGG--GCGGCAAUAGCCGUUCCAUAAAUUCUAA
...........((((((((.(((..(((((.......)))))..)..))))).......((((.(((((((((....(((((((....))--).))))))))))))).)))).))))).. ( -34.30)
>DroYak_CAF1 37045 120 - 1
CACUGGAGCGAGGAGUGGAUCCGGCUCGAUAAGAUUAGUCGGUUCCAGCUCCAACGACAUAUACAAUGGCUAUUUAUUGUCUCCAUUUGGACGCGGCAAAUGCCGUUCCAUAAAUUCUAA
...((((((((((((((((.((((((..........)))))).)))).)))).....(((.....)))........))).)))))..((((.(((((....))))))))).......... ( -41.20)
>consensus
CACUGAAGCGAGGAGUGGAUCCGGCUCGAUAAGAUUAGUCGGUUCCAGCUCCAACAACAUAUACAACGGCUAUUUAUUGUCUCCAUUUGGACGCGGCAAUAGCCGUUCCAUAAAUUCUAA
(((....))).((((((((.(((((((.....))...))))).)))).)))).......((((.((((((((((..((((.(((....))).)))).)))))))))).))))........ (-31.19 = -32.62 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:35 2006