Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,871,097 – 1,871,187 |
Length | 90 |
Max. P | 0.866751 |
Location | 1,871,097 – 1,871,187 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 81.27 |
Mean single sequence MFE | -39.98 |
Consensus MFE | -25.22 |
Energy contribution | -26.30 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.19 |
Mean z-score | -2.51 |
Structure conservation index | 0.63 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1871097 90 + 22224390 GACACCGAGGAACCAACGGGAUCGGGUGGCCAAAGAAAGAGCUCCGUGGAGCGAUCUUUGG------CGCCCGUUAUACGCGGACGAAAGUCCAUC ((..(((.(....)..)))..))(((((.(((((((....((((....))))..)))))))------))))).........((((....))))... ( -40.60) >DroPse_CAF1 642 96 + 1 GACGGAGAAGAGCCGCCAUCGUCGGGCAGUCAGAGGAAGAGCUCGGUGGAGCGCUCGGUUGUUGCCCCCCCCGUCAUACGCGGACGCAAGUCCAUU (((((....((((.((..((..(((((..((....))...)))))..)).))))))(((....)))....)))))......((((....))))... ( -38.90) >DroSec_CAF1 8422 90 + 1 GACGCCGAGGAACCAACGGGAUCGGGUAGCCAAAGGAAGAGCUCCGUGGAGCGAUCUUUGG------CGCCCGUUAUACGCGGACGAAAGUCCAUC ...((....((.((....)).))((((.((((((((....((((....))))..)))))))------))))).......))((((....))))... ( -39.00) >DroEre_CAF1 7039 90 + 1 GAUAACGAGGAGCCAACGGGAUCGGGUGGCCAAAGAAAGAGCUCCGUGGAGCGAUCUUUGG------CACCCGUUAUACGCGGACGGAAGUCCAUC .(((((...((.((....)).))(((((.(((((((....((((....))))..)))))))------))))))))))....((((....))))... ( -41.90) >DroYak_CAF1 9000 90 + 1 GACACCGAGGAGCCAACGGGAUCGGGUGGCCAAAGAAAGAGCUCCGUGGAGCGGUCUUUGG------CGCCCGUUAUACGCGGACGGAAGUCCAUC ((..(((.(....)..)))..))(((((.(((((((....((((....))))..)))))))------))))).........((((....))))... ( -41.70) >DroPer_CAF1 642 96 + 1 GACGGCGAAGAGCCGCCAUCGUCGGGUAGUCAGAGGAAGAGCUCGGUGGAGCGCUCGGUUGUUGCCCCCCCCGUCAUACGCGGACGCAAGUCCAUU (((((((......))))......((((((.(((..((.(.((((....)))).)))..))))))))).....)))......((((....))))... ( -37.80) >consensus GACACCGAGGAGCCAACGGGAUCGGGUAGCCAAAGAAAGAGCUCCGUGGAGCGAUCUUUGG______CGCCCGUUAUACGCGGACGAAAGUCCAUC (((......((.((....)).))((((..(((((((....((((....))))..))))))).......)))))))......((((....))))... (-25.22 = -26.30 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:51 2006