Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,756,656 – 16,756,840 |
Length | 184 |
Max. P | 0.997092 |
Location | 16,756,656 – 16,756,760 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.96 |
Mean single sequence MFE | -32.42 |
Consensus MFE | -27.78 |
Energy contribution | -28.10 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.10 |
Mean z-score | -2.63 |
Structure conservation index | 0.86 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16756656 104 + 22224390 ----------------CAAUGGUUGUUGUUAGCGUUAUGCGACUGCCAUUGUUGUAUUGCUGUAGAAUGAUAAGCUGUCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGUC ----------------(((((((.(((((.........))))).))))))).((.((((..(((((..(((.....))))))))))))))(((((((((....)))))))))........ ( -32.50) >DroSec_CAF1 43644 99 + 1 ----------------CAAUGGUUGUUGUUGGCGUUAUGCGACUGCCAUUGUUGUAUUGC----GAGUGAUAAGCUGUCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGUCUCUCGU- ----------------(((((((.(((((.........))))).))))))).......((----(((.(((..((((...........))))(((((((....)))))))))).)))))- ( -34.50) >DroSim_CAF1 40831 99 + 1 ----------------CAAUGGUUGUUGUUGGCGUUAUGCGACUGCCAUUGUUGUAUUGC----GAGUGAUAAGCUGUCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU- ----------------(((((((.(((((.........))))).))))))).......((----((((((((.........)))))....(((((((((....)))))))))..)))))- ( -34.60) >DroEre_CAF1 35026 99 + 1 ----------------CAAUGGUUUUUGUAAGCGUUAGGCGACUUUCAUUGUUGUAUUCC----GAGUGAUAAGCUGGCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU- ----------------.((((.((.....)).))))..(((((.......)))))....(----((((((((((....)).)))))....(((((((((....)))))))))..)))).- ( -27.30) >DroYak_CAF1 35473 115 + 1 CGAUGGUUCAAUGGUUUAAUGGUUGUUGUAAGCGUUAUGCGACUUCCAUUGUUGUAUUCC----AAGUGAUAAGCUGUCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU- .(((((((((.(((..((((((..((((((.......))))))..)))))).......))----)..)))...))))))...........(((((((((....))))))))).......- ( -33.20) >consensus ________________CAAUGGUUGUUGUUAGCGUUAUGCGACUGCCAUUGUUGUAUUGC____GAGUGAUAAGCUGUCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU_ ................(((((((.(((((.........))))).))))))).............((.(((((((....)).))))).)).(((((((((....)))))))))........ (-27.78 = -28.10 + 0.32)
Location | 16,756,720 – 16,756,840 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.66 |
Mean single sequence MFE | -28.74 |
Consensus MFE | -28.14 |
Energy contribution | -27.78 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -1.71 |
Structure conservation index | 0.98 |
SVM decision value | 2.58 |
SVM RNA-class probability | 0.995449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16756720 120 + 22224390 CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGUCGCGGCUUUAGGGCCUAAGUACACACCGAAUCGAAGAUUAAUUGAUUUUAAACGAUCUAUUAGACUGAUAUGCCAGUGGAA .(((((.((.(((((((((....)))))))))...((((...((((....))))............(((((((.......)))))))...)))).......)).)))))........... ( -30.20) >DroSec_CAF1 43704 110 + 1 CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGUCUCUCGU---GGCUUUAGGGCCUAAGUACACACCGAAUCGAAGAUUAAUUGAUUUUAAACGAUCUAUUAGACUGAUACGCC------- .(((((.((.(((((((((....)))))))))...((((---((((....))))............(((((((.......)))))))...)))).......)).)))))....------- ( -28.40) >DroSim_CAF1 40891 110 + 1 CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU---GGCUUUAGGGCCUAAGUACACACCGAAUCGAAGAUUAAUUGAUUUUAAACGAUCUAUUAGACUGAUACGCC------- .(((((.((.(((((((((....)))))))))...((((---((((....))))............(((((((.......)))))))...)))).......)).)))))....------- ( -30.40) >DroEre_CAF1 35086 117 + 1 CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU---GGCUUUAGGGCUUAAGUACACCCCGAAUCGAAGAUUAAUUGGUUUUAAACGAUCUAUUAGACUGAUACGCCUGUGAAA ..........(((((((((....))))))))).((.((.---(((((..(((..........)))..))..........((..((((.............))))..))..))))).)).. ( -27.42) >DroYak_CAF1 35549 106 + 1 CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU---GGCUUUAGGGCUUAAGUACACACCGAAUCGAAGAUUAAUUGAUUUUAAACGAUCUAUUAGACUGAU-----------A .(((((.((.(((((((((....)))))))))...((((---((((....))))............(((((((.......)))))))...)))).......)).))))-----------) ( -27.30) >consensus CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU___GGCUUUAGGGCCUAAGUACACACCGAAUCGAAGAUUAAUUGAUUUUAAACGAUCUAUUAGACUGAUACGCC______A .(((((.((.(((((((((....)))))))))...((((...((((....))))............(((((((.......)))))))...)))).......)).)))))........... (-28.14 = -27.78 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:26 2006