Locus 6736

Sequence ID X_DroMel_CAF1
Location 16,756,159 – 16,756,265
Length 106
Max. P 0.560681
window11009

overview

Window 9

Location 16,756,159 – 16,756,265
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.88
Mean single sequence MFE -24.89
Consensus MFE -17.58
Energy contribution -19.06
Covariance contribution 1.48
Combinations/Pair 1.08
Mean z-score -1.63
Structure conservation index 0.71
SVM decision value 0.05
SVM RNA-class probability 0.560681
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16756159 106 + 22224390
GGCAAAUGGCAGCAAAGAGA------------AA-AAGGCAGAGAA-AAAGGCAAAAAGUGUAUGGCCACAAUUGCCGACGACGAAACCAGUUGGGUUCCCAGCGUUUUUUUUUUUUUUU
.((........))(((((((------------((-(((((......-...(((((...(((......)))..))))).............(((((....))))))))))))))))))).. ( -27.30)
>DroSec_CAF1 43173 106 + 1
GGCAAAUGGCCGCAAAAAGACAA---------AAAAAGACAGAGAA-AAAGGCAAAAAGUGUAUGGCCACAAUUGCCGACGACGAAACCAGUUGGGUUCCCAGCGUUUUUUUUUUU----
(((.....)))..........((---------((((((((......-...(((((...(((......)))..))))).............(((((....)))))))))))))))..---- ( -27.20)
>DroSim_CAF1 40333 104 + 1
GGCAAAUGGCCGCAAAAAGACAA---------AA-AAGGCAGAGAA-AAAGGCAAAAAGUGUAUGGCCACAAUUGCCGACGACGAAACCAGUUGGGUUCCCAGAGUUUUUUU-UUU----
(((((.((((((.......(((.---------..-...((......-....))......))).))))))...)))))......(((((...((((....)))).)))))...-...---- ( -22.80)
>DroEre_CAF1 34579 97 + 1
GGCAAAUGGCCGCAAAAAGA------------AAAAAAUCUGAUAA-AAAGGCAAAAAGUGUAUGCCCACAUUUGCCGACGACGAAACCAGUUGGGUUCCCAGCGUUUUU----------
(((((((((((......(((------------......))).....-...))).....((....))...))))))))......(((((..(((((....)))))))))).---------- ( -24.94)
>DroYak_CAF1 34951 110 + 1
GGCAAAUGCCCACAAAAAGACGAAAAACGAAAAAAAAAUCAGAGAAAAAAGGCAAAGAGUGUAUGCCCACAAUUGCUGACGACGAAACCAGUUGGGUUCCCAGCGUUUUU----------
(((....)))............((((((..........((((........((((.........))))........))))...........(((((....)))))))))))---------- ( -22.19)
>consensus
GGCAAAUGGCCGCAAAAAGAC_A_________AAAAAGGCAGAGAA_AAAGGCAAAAAGUGUAUGGCCACAAUUGCCGACGACGAAACCAGUUGGGUUCCCAGCGUUUUUUU_UUU____
(((.....)))..((((((((.............................(((((...(((......)))..))))).............(((((....)))))))))))))........ (-17.58 = -19.06 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:24 2006