Locus 6735

Sequence ID	X_DroMel_CAF1
Location	16,755,174 – 16,755,333
Length	159
Max. P	0.586574

overview

Window 7

Location	16,755,174 – 16,755,294
Length	120
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	93.89
Mean single sequence MFE	-31.65
Consensus MFE	-26.42
Energy contribution	-27.93
Covariance contribution	1.50
Combinations/Pair	1.02
Mean z-score	-1.58
Structure conservation index	0.83
SVM decision value	0.03
SVM RNA-class probability	0.547638
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16755174 120 + 22224390
AUUUGAUGUAUGUGUGGCCCGGGGGACUCUGGAAAUCAUUGUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUUCACUGUGAUUUAACCUGGGAGAAUCUUUUUUGUCUCGC
...........(((.(((..(((((((((((((((((((((..(((((((((...(((((....)))))..)))))))))..))..)))))))..))..))))..))))))..))).))) ( -30.80)
>DroSec_CAF1 42184 120 + 1
AUUCGAUGUAUGUGUGGAACGGGGGACUCUGGAAAUCAUUGUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUUCACUGUGAUUUAACCUGGGAGAAUCUUUUUUUUCUCGC
...........(((.((((..((((((((((((((((((((..(((((((((...(((((....)))))..)))))))))..))..)))))))..))..))))..)))))..)))).))) ( -31.40)
>DroSim_CAF1 39345 120 + 1
AUUUGAUGUAUGUGUGGAACGGGGGACUCUGGAAAUCAUUGUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUUCACUGUGAUUUAACCUGGGAGAAUCUUUUUUUUCUCGC
...........(((.((((..((((((((((((((((((((..(((((((((...(((((....)))))..)))))))))..))..)))))))..))..))))..)))))..)))).))) ( -31.40)
>DroYak_CAF1 33993 117 + 1
AUACGAUGUAUGAAUGGCC-CGGGGACUGUGGAAAUCAUUGUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUCCACUGUGAUUUAACCUGGGAGAAUCUUUUU--UCUCCC
...............((((-((....).).))(((((((((..(((((((((...(((((....)))))..)))))))))..))..)))))))..)).(((((((......)--)))))) ( -33.00)
>consensus
AUUCGAUGUAUGUGUGGAACGGGGGACUCUGGAAAUCAUUGUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUUCACUGUGAUUUAACCUGGGAGAAUCUUUUUUUUCUCGC
...........(((.((((.(((((((((((((((((((((..(((((((((...(((((....)))))..)))))))))..))..)))))))..))..))))..)))))).)))).))) (-26.42 = -27.93 +   1.50)

alignment

secondary structure

dotplot

Window 8

Location	16,755,214 – 16,755,333
Length	119
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	96.31
Mean single sequence MFE	-22.92
Consensus MFE	-18.36
Energy contribution	-18.56
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-1.69
Structure conservation index	0.80
SVM decision value	0.11
SVM RNA-class probability	0.586574
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16755214 119 + 22224390
GUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUUCACUGUGAUUUAACCUGGGAGAAUCUUUUUUGUCUCGCUCUAUGUUUUGAUUAUU-UCUGUAUUUUGUUUUCUGAUCU
(..(((((((((...(((((....)))))..)))))))))..)((.((((((.(((.((((.((..(......)..))..)))).)))..)))))).-...))................. ( -20.00)
>DroSec_CAF1 42224 119 + 1
GUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUUCACUGUGAUUUAACCUGGGAGAAUCUUUUUUUUCUCGCUCUAUGUUUUGAUUAUU-UCUGUGUUUUGUUUUCUGAUCU
...(((((((((...(((((....)))))..)))))))))..(((.((((((.(((.((((((((........)))))...))).)))..)))))).-...)))................ ( -22.70)
>DroSim_CAF1 39385 119 + 1
GUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUUCACUGUGAUUUAACCUGGGAGAAUCUUUUUUUUCUCGCUCUAUGUUUUGAUUAUU-UCUGUGUUUUGUUUUCUGAUCU
...(((((((((...(((((....)))))..)))))))))..(((.((((((.(((.((((((((........)))))...))).)))..)))))).-...)))................ ( -22.70)
>DroEre_CAF1 33683 118 + 1
GUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUUCACUGUGAUUUAACCUGGGAGAAUCUUUUU--UCUCGCUCUAUGUUUUGACUAUUUUUUGUGUUUUGCUUUCUGAUCU
(..(((((((((...(((((....)))))..)))))))))..).....((((......(.(((((......)--)))).).....((...(((..........)))..)).....)))). ( -21.30)
>DroYak_CAF1 34032 117 + 1
GUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUCCACUGUGAUUUAACCUGGGAGAAUCUUUUU--UCUCCCUCUAUGUUUUGAUUAUU-UUUGUGUUUUGUUUUCUGAUCU
...(((((((((...(((((....)))))..)))))))))..(((.((((((.(((..(((((((......)--)))))).....)))..)))))).-...)))................ ( -27.90)
>consensus
GUUAUUAAUACGAUUAUUGUGUGCACAGUUGCGUGUUAAUUUCACUGUGAUUUAACCUGGGAGAAUCUUUUUU_UCUCGCUCUAUGUUUUGAUUAUU_UCUGUGUUUUGUUUUCUGAUCU
(..(((((((((...(((((....)))))..)))))))))..)...((((((.(((.(((((((..........))))...))).)))..))))))........................ (-18.36 = -18.56 +   0.20)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:23 2006