| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,753,151 – 16,753,268 |
| Length | 117 |
| Max. P | 0.886546 |
| Location | 16,753,151 – 16,753,268 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 77.22 |
| Mean single sequence MFE | -25.49 |
| Consensus MFE | -16.43 |
| Energy contribution | -17.10 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16753151 117 - 22224390 GCUUUUGAUAUUUUUCGACGCUUUUGUCCAUGUUUUUCUGCGUCGCAAAACAUGGGCCUUUCCCAAGCGCCUUCAUUUGCGAUGAAAAAAAAAAAGAUCCAAAAAUCAAGAGGAGGA .((((((((.(((.((((((....))))....(((((...(((((((((....(((((((....))).))))...)))))))))...)))))...))...))).))))))))..... ( -29.90) >DroSim_CAF1 37363 96 - 1 GCUUUUGAUAUUUUUCGACGCUUUUGUCCGUGUUUUUCUGCGUCGCAAAACAUGGGUCUUUCCCAAGCGCCUUCAUUU---------------------CAAAAAUCAAGAGAAGAA .((((((((.((((.((((((..................)))))).))))..((((.....)))).............---------------------.....))))))))..... ( -22.47) >DroYak_CAF1 31963 102 - 1 GCUUUUGAUAUU--UCUACGCUUUGGUCCGUGUUUAUCUGCGUCGCAAAACAUGGGCCUUUCCCAAGCGCCUUCAUCAGCAAAGAU-------------UAAAAAUCCAAAAAAAAA (((..(((....--....(((((.(((((((((((...(((...))))))))))))))......)))))...)))..)))......-------------.................. ( -24.10) >consensus GCUUUUGAUAUUUUUCGACGCUUUUGUCCGUGUUUUUCUGCGUCGCAAAACAUGGGCCUUUCCCAAGCGCCUUCAUUUGC_A_GA______________CAAAAAUCAAGAGAAGAA .((((((((..........((((..((((((((((...(((...))))))))))))).......))))((........))........................))))))))..... (-16.43 = -17.10 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:10 2006