Locus 6731

Sequence ID X_DroMel_CAF1
Location 16,752,999 – 16,753,113
Length 114
Max. P 0.961940
window10992

overview

Window 2

Location 16,752,999 – 16,753,113
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.59
Mean single sequence MFE -27.06
Consensus MFE -25.60
Energy contribution -26.04
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.45
Structure conservation index 0.95
SVM decision value 1.53
SVM RNA-class probability 0.961940
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16752999 114 + 22224390
AGAUUUGGUAUUCGUAUUCC------CACUCGCAUUUCAUAAUAUCACCGAGUGAUAUGAUAGUGCUAGAAGCGUCUCAAUGGCAAACAUUGAACUUUGAUGUGCUCUGCGAUUAUAUAA
.......(((.((((.....------.....(((((.....(((((((...)))))))...))))).(((.(((((((((((.....)))))).....)))))..))))))).))).... ( -27.20)
>DroSec_CAF1 40056 120 + 1
AGAUUUGGUAUUCGUAUUCCCAUUCCCAUUCGCAUUUCAUAAUAUCACCGAGUGAUAUGAUAGUGCUAGAAGCGUCUCAAUGGCAAACAUUGAACUUUGAUGUGCUCUGCGAUUAUAUAA
.......(((.((((................(((((.....(((((((...)))))))...))))).(((.(((((((((((.....)))))).....)))))..))))))).))).... ( -27.20)
>DroSim_CAF1 37205 120 + 1
AGAUUUGGUAUUCGUAUUCCCAUUCCCAUUCGCAUUUCAUAAUAUCACCGAGUGAUAUGAUAGUGCUAGAAGCGUCUCAAUGGCAAACAUUGAACUUUGAUGUGCUCUGCGAUUAUAUAA
.......(((.((((................(((((.....(((((((...)))))))...))))).(((.(((((((((((.....)))))).....)))))..))))))).))).... ( -27.20)
>DroEre_CAF1 31543 114 + 1
AGAUUUGCUAUUCGCAUUCC------CACUCGCAUUUCAUAAUAUCACAGAGUGAUAUGAUAGUGCUAGAAGCGUCUCAAUGGCAAACAUUGAACUUUGAUGUGCUCUGCGAUUAUAUAA
...........((((.....------.....(((((.....(((((((...)))))))...))))).(((.(((((((((((.....)))))).....)))))..)))))))........ ( -27.60)
>DroYak_CAF1 31785 114 + 1
AGAUUUGGAAUUCGUAUUCC------CACUCGCAUUUCAUAAUAUCACAGAGUGAUAUGAUAGUGCUAGAAGCCUCUCAAUGGCAAACAUUGAACUUUGAUGUGCUCUGCGAUUAUAUAA
......(((((....)))))------...(((((.......(((((((...)))))))...((..(..((((....((((((.....)))))).))))...)..)).)))))........ ( -26.10)
>consensus
AGAUUUGGUAUUCGUAUUCC______CACUCGCAUUUCAUAAUAUCACCGAGUGAUAUGAUAGUGCUAGAAGCGUCUCAAUGGCAAACAUUGAACUUUGAUGUGCUCUGCGAUUAUAUAA
.......(((.((((................(((((.....(((((((...)))))))...))))).(((.(((((((((((.....)))))).....)))))..))))))).))).... (-25.60 = -26.04 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:09 2006