| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,749,959 – 16,750,075 |
| Length | 116 |
| Max. P | 0.979929 |
| Location | 16,749,959 – 16,750,075 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.30 |
| Mean single sequence MFE | -29.51 |
| Consensus MFE | -26.31 |
| Energy contribution | -26.38 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.935208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16749959 116 + 22224390 UUUU----UUUGAGAGCCAAGUCGCAUGAAGAUGCGUUUGCAAGCGGAUUUCCGCACACAAAUUGCCCACUUGCAAUGGCAAUUUGCAUAAAUGUUGCGAUAACAAAUCACCUAGAAACA ((((----(.(((.......((((((.....(((((.((((..((((....))))......(((((......))))).))))..)))))......))))))......)))...))))).. ( -29.92) >DroSec_CAF1 37160 114 + 1 --UU----UUUUAGAGCCAAGUUGCAUGAAGAUGCGUUUGCAAGCGGAUUUCCGCACACAAAUUGCCCACUUGCAAUGGCAAUUUGCAUAAAUGUUGCGAUAACAAUUCACCUAGAAACA --.(----((((((.((......)).((((..((...((((((((((....))))...(((((((((..........)))))))))........))))))...)).)))).))))))).. ( -30.50) >DroEre_CAF1 28784 113 + 1 --UU----UUCGAGAGCCAAGUCGCAUGAAGAUGCGU-UGCAAGCGGAUUUCCGCACACAAAUUGCCCACUUGCAAUGGCAAUUUGCAUAAAUGUUGCGAUAACAAAUCACCUAGAAACA --.(----(((.((.........((((....))))((-(((((((((....))))...(((((((((..........)))))))))........)))))))..........)).)))).. ( -30.20) >DroYak_CAF1 28691 117 + 1 --UUUUUGUUGAAAAGUCAAGUCGCAUGAAGAUGCGU-UGCAAACGGAUUUCCGCACACAAAUUGCCCACUUGCAAUGGCAAUUUGCAUAAAUGUUGCGAUAACAAAUCACCUAGAAACA --..(((((((...........(((((....)))))(-(((((.(((....)))....(((((((((..........)))))))))........)))))))))))))............. ( -27.40) >consensus __UU____UUUGAGAGCCAAGUCGCAUGAAGAUGCGU_UGCAAGCGGAUUUCCGCACACAAAUUGCCCACUUGCAAUGGCAAUUUGCAUAAAUGUUGCGAUAACAAAUCACCUAGAAACA ....................((((((.....(((((..(((..((((....))))......(((((......))))).)))...)))))......))))))................... (-26.31 = -26.38 + 0.06)
| Location | 16,749,959 – 16,750,075 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.30 |
| Mean single sequence MFE | -32.83 |
| Consensus MFE | -31.11 |
| Energy contribution | -31.42 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.979929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16749959 116 - 22224390 UGUUUCUAGGUGAUUUGUUAUCGCAACAUUUAUGCAAAUUGCCAUUGCAAGUGGGCAAUUUGUGUGCGGAAAUCCGCUUGCAAACGCAUCUUCAUGCGACUUGGCUCUCAAA----AAAA .....(((((((((.....)))((((.....((((((((((((..........))))))))))))((((....))))))))...(((((....)))))))))))........----.... ( -33.90) >DroSec_CAF1 37160 114 - 1 UGUUUCUAGGUGAAUUGUUAUCGCAACAUUUAUGCAAAUUGCCAUUGCAAGUGGGCAAUUUGUGUGCGGAAAUCCGCUUGCAAACGCAUCUUCAUGCAACUUGGCUCUAAAA----AA-- .....((((((...........((((.....((((((((((((..........))))))))))))((((....))))))))....((((....)))).))))))........----..-- ( -31.80) >DroEre_CAF1 28784 113 - 1 UGUUUCUAGGUGAUUUGUUAUCGCAACAUUUAUGCAAAUUGCCAUUGCAAGUGGGCAAUUUGUGUGCGGAAAUCCGCUUGCA-ACGCAUCUUCAUGCGACUUGGCUCUCGAA----AA-- ..((((.(((((((.....)))))................(((((((((((((((...((((....))))..))))))))))-)(((((....)))))...)))).)).)))----).-- ( -34.20) >DroYak_CAF1 28691 117 - 1 UGUUUCUAGGUGAUUUGUUAUCGCAACAUUUAUGCAAAUUGCCAUUGCAAGUGGGCAAUUUGUGUGCGGAAAUCCGUUUGCA-ACGCAUCUUCAUGCGACUUGACUUUUCAACAAAAA-- ........(.(((...((((..((((.....((((((((((((..........))))))))))))((((....)))))))).-.(((((....)))))...))))...))).).....-- ( -31.40) >consensus UGUUUCUAGGUGAUUUGUUAUCGCAACAUUUAUGCAAAUUGCCAUUGCAAGUGGGCAAUUUGUGUGCGGAAAUCCGCUUGCA_ACGCAUCUUCAUGCGACUUGGCUCUCAAA____AA__ .....((((((...........((((.....((((((((((((..........))))))))))))((((....))))))))...(((((....)))))))))))................ (-31.11 = -31.42 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:04 2006