Locus 6726

Sequence ID X_DroMel_CAF1
Location 16,749,071 – 16,749,186
Length 115
Max. P 0.645985
window10979

overview

Window 9

Location 16,749,071 – 16,749,186
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.73
Mean single sequence MFE -29.28
Consensus MFE -18.10
Energy contribution -18.78
Covariance contribution 0.68
Combinations/Pair 1.04
Mean z-score -1.94
Structure conservation index 0.62
SVM decision value 0.23
SVM RNA-class probability 0.645985
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16749071 115 + 22224390
AUGGUCAAGCUU-ACGAUAAUCGCUUUUCGCUUG----CAAACUGUGACUUUCGACUUAAGAAAGUGAAUGACUUUCAAAUGAAGGGCGAUGUUAGUUAAUGGAGCUGAAAAUUCCAGAC
.(((...(((((-((....(((((((((((.(((----.......(.((((((.......)))))).)........))).)))))))))))....)).....))))).......)))... ( -28.56)
>DroSec_CAF1 36319 103 + 1
-------------ACGAUAAUCGCUUUUCACUUG----CAAACUGUGACUUUCAACUUAAGAAAGUGAAUGACUUUCAAACGAAGGGCGGUGUUAGUUAAUGGAGCUGAAAAUUCCAGAC
-------------((....((((((((((..(..----(.....)..)............((((((.....))))))....))))))))))....))...(((((.(....))))))... ( -23.20)
>DroSim_CAF1 34664 103 + 1
-------------ACGAUAAUCGCUUUUCACUUG----CAAACUGUGCCUUUCGACUUAAGAAAGUGAAUGACUUUCAAACGAAGGGCGCUGCUAGUUAAUGGAGCUGAAAAUUCCAGAC
-------------.......(((((((..(((.(----((....((((((((((......((((((.....))))))...))))))))))))).)))....))))).))........... ( -28.50)
>DroEre_CAF1 27982 115 + 1
AUGGUAAAGCUU-ACGAUUAUCGCUUUUCACCUG----CAAACUGAGACUUUAAACUUAAGAAAGUGAAUGACUUUCAAAUGCAGGGCGAUGUGAGUUAAUGGAGCUCAAAAUUCCAGAU
.(((...(((((-.......((((...((.((((----((...((((........)))).((((((.....))))))...))))))..)).)))).......))))).......)))... ( -29.24)
>DroYak_CAF1 27836 120 + 1
AUGGUCAAGCUUAACGAUAAUCGCUUUUCAAGUCUCAGUUUGCAGAGACUUUCAACUUCAGAAAGUGUAUGACUUUCAAAUGAAGGGCGAUGUGAGUUAAUGGAGCUGAAAAUUCCAGAC
...(((....(((((....(((((((((((((((((........))))))..........((((((.....))))))...)))))))))))....)))))(((((.(....))))))))) ( -36.90)
>consensus
AUGGU_AAGCUU_ACGAUAAUCGCUUUUCACUUG____CAAACUGUGACUUUCAACUUAAGAAAGUGAAUGACUUUCAAAUGAAGGGCGAUGUUAGUUAAUGGAGCUGAAAAUUCCAGAC
.............((....((((((((((...................(((((.......)))))((((.....))))...))))))))))....))...(((((.......)))))... (-18.10 = -18.78 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:57 2006