Locus 6725

Sequence ID X_DroMel_CAF1
Location 16,748,656 – 16,748,776
Length 120
Max. P 0.977144
window10978

overview

Window 8

Location 16,748,656 – 16,748,776
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.92
Mean single sequence MFE -24.80
Consensus MFE -21.92
Energy contribution -22.56
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.88
SVM decision value 1.79
SVM RNA-class probability 0.977144
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16748656 120 + 22224390
CUUCUUAAUCAUGAGAAUUCAUUUACAGGGGCGAAAAACCCAAAGACCCAAAACAACUGGCUGCCGCAAAUAUAAAUAAACAAAUUGCAUAAACUUUGCGGCUUAGUGGGGCCAAAAACA
.((((((....))))))..........(((........)))...(.(((......((((...(((((((((((.(((......)))..)))...)))))))).)))).))).)....... ( -25.00)
>DroSec_CAF1 35904 120 + 1
CUUCUUAAUCAUGAGAAUUCAUUUACAGGGGCGAAAAACCCAAAGACCCAAAACAACUGGCUGCCGCAAAUAUAAAUAAACAAAUUGCAUAAACUUUGCGGCUUAGUGGGGCCAAAAACA
.((((((....))))))..........(((........)))...(.(((......((((...(((((((((((.(((......)))..)))...)))))))).)))).))).)....... ( -25.00)
>DroSim_CAF1 34252 118 + 1
CUUCUUAAUCAUGAGAACUCAUUUACAGGGGCGAAAAACCCAAAGACCCAAAACAACUGGCUGCCGCAAAUAUAAAUAAACAAAUUGCAUAAACU-UGCGGGCUAGUGGGGCCAA-AACA
.((((((....))))))..........(((........)))...(.(((......((((((..((((((.(((.(((......)))..)))...)-))))))))))).))).)..-.... ( -26.10)
>DroEre_CAF1 27599 119 + 1
CUUCUUAAUCAUGAGAAUUCAUUUACAGUGGCGAAAAACCCAAAGACCCAAAACAACUGGCUGCCGCAAAUAUAAAUAAACAAAUUGCAUAAACUUUGCGGCUUAGUGGGGCCAAAA-CA
.((((((....))))))...........((((......((((.....(((.......)))..(((((((((((.(((......)))..)))...))))))))....))))))))...-.. ( -23.60)
>DroYak_CAF1 27413 120 + 1
CUUCUUAAUCAAGAGAACUCAUUUACAGGGGCGAAAAACCCAAAGACCCAAAACAACUGGCUGCCGCAAAUAUAAAUAAACAAAUUGCAUAAACUUUGCGGCUUAGUGGGGCCAAAAGCA
.(((((......)))))..........(((........)))...(.(((......((((...(((((((((((.(((......)))..)))...)))))))).)))).))).)....... ( -24.30)
>consensus
CUUCUUAAUCAUGAGAAUUCAUUUACAGGGGCGAAAAACCCAAAGACCCAAAACAACUGGCUGCCGCAAAUAUAAAUAAACAAAUUGCAUAAACUUUGCGGCUUAGUGGGGCCAAAAACA
.((((((....))))))..........(((........)))...(.(((......(((((..(((((((((((.(((......)))..)))...))))))))))))).))).)....... (-21.92 = -22.56 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:56 2006