Locus 6723

Sequence ID X_DroMel_CAF1
Location 16,747,149 – 16,747,264
Length 115
Max. P 0.949184
window10975

overview

Window 5

Location 16,747,149 – 16,747,264
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.90
Mean single sequence MFE -34.77
Consensus MFE -32.62
Energy contribution -32.62
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.94
SVM decision value 1.39
SVM RNA-class probability 0.949184
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16747149 115 - 22224390
CUGCCGUUGCGGUGCCAGAUAAAAUGGAUAAUGGCAA-AAAUCAGCCGAAAUCAGCUAAAAUCAGGCAAAAUCAGCUGCUCGUUAUCGCUCUCGAGUGCUGCU----GUGGUGGCCAAAC
..((((..((((((((.(((......(((..((((..-......))))..))).......))).))))....((((.(((((..........)))))))))))----))..))))..... ( -35.92)
>DroSec_CAF1 34472 116 - 1
CUGCCGUUGCGGUGCCAGAUAAAAUGGAUAAUGGCAAAAAAUCAGCCGAAAUCAGCUAAAAUCAGGCAAAAUCAGCUGCUCGUUAUCGCUCUCGAGUGCUGCU----GUGGUGGCCAAAC
..((((..((((((((.(((......(((..((((.........))))..))).......))).))))....((((.(((((..........)))))))))))----))..))))..... ( -35.12)
>DroSim_CAF1 32793 116 - 1
CUGCCGUUGCGGUGCCAGAUAAAAUGGAUAAUGGCAAAAAAUCAGCCGAAAUCAGCUAAAAUCAGGCAAAAUCAGCUGCUCGUUAUCGCUCUCGAGUGCUGCU----GUGGUGGCCAAAC
..((((..((((((((.(((......(((..((((.........))))..))).......))).))))....((((.(((((..........)))))))))))----))..))))..... ( -35.12)
>DroEre_CAF1 26148 113 - 1
CUGCCGUUGCGAUGCCAGAUA--AUGGAUAAUGGCAA-AAAUCAGCCGAAAUCAGCGAAAAUCAGGCAAAAUCAGCUGCUCGUUAUCGCUCUCGAGUGCUGCU----GUGGUGGCCAAAC
..((((..(((.((((.(((.--...(((..((((..-......))))..))).......))).))))....((((.(((((..........))))))))).)----))..))))..... ( -32.70)
>DroYak_CAF1 25952 117 - 1
CCGCCGUUGCGAUGCCAGAUA--AUGGAUAAUGGCAA-AAAUCAGCCGAAAUCAGCUAAAAUCAGGCAAAAUCAGCUGCUCGUUAUCGCUCUCGAGUGCUGCUGUCUGUGGUGGCCAAAC
((((((((((.((.(((....--.)))...)).))))-.....(((.(....).))).....((((((....((((.(((((..........))))))))).))))))))))))...... ( -35.00)
>consensus
CUGCCGUUGCGGUGCCAGAUAAAAUGGAUAAUGGCAA_AAAUCAGCCGAAAUCAGCUAAAAUCAGGCAAAAUCAGCUGCUCGUUAUCGCUCUCGAGUGCUGCU____GUGGUGGCCAAAC
..((((..((..((((.(((......(((..((((.........))))..))).......))).))))....((((.(((((..........)))))))))......))..))))..... (-32.62 = -32.62 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:54 2006