Locus 6720

Sequence ID X_DroMel_CAF1
Location 16,745,477 – 16,745,584
Length 107
Max. P 0.912515
window10964

overview

Window 4

Location 16,745,477 – 16,745,584
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.80
Mean single sequence MFE -26.36
Consensus MFE -12.06
Energy contribution -12.10
Covariance contribution 0.04
Combinations/Pair 1.19
Mean z-score -2.06
Structure conservation index 0.46
SVM decision value 1.08
SVM RNA-class probability 0.912515
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16745477 107 - 22224390
CUUAAACGAACGACGUCGU-CGUUUAUUGUCAUCUUCCAUUCGCCUCUCGAUGUUUGUGUCUCAAU-UUCGGUAUUCCGACGCUACAAUGUGAAU--AUGGAU---GAUAU------AUA
..(((((((.((....)))-)))))).((((((((...((((((.....(((......))).....-.((((....)))).........))))))--..))))---)))).------... ( -26.80)
>DroSec_CAF1 32830 94 - 1
CUUAAACGAACGACGUCGUUCGUUUAUUGUCGUCUCCCAUUCGCCUCUCGGUGUUUGUGUCUCAAU-UUCGGUAUUCCGA--------------U--AUGGAU---GAUAU------AUA
..((((((((((....)))))))))).((((((((..((..((((....))))..)).........-.((((....))))--------------.--..))))---)))).------... ( -30.30)
>DroSim_CAF1 31164 94 - 1
CUUAAACGAACGACGUCGUUCGUUUAUUGUCGUCUCCCAUUCCCCUCUCGGUGUUUGUGUCUCAAU-UUCGGUAUUCCGA--------------U--AUGGAU---GAUAU------AUA
..((((((((((....)))))))))).((((((((..((..(.((....)).)..)).........-.((((....))))--------------.--..))))---)))).------... ( -25.90)
>DroEre_CAF1 24298 113 - 1
CUUAAACGAACGACGCUGU-CGUUUAUUGUCGUCUUCUCAUCACUUCUCGGUAUU-----CUCAAU-UUCGGUAUUCCGACGUCACGAUGUUGAUACAUACGUAUGUAUGUAUGUUUAUA
..((((((((((((...))-)))))...(((((.........(((....)))...-----......-.((((....))))....)))))....((((((((....))))))))))))).. ( -23.50)
>DroYak_CAF1 24229 113 - 1
CUUAAACGAACGACGUUGU-CGUUUAUUGUCGUCUCCUCAUCGCUUCUCGGUGUUUGUAUCUCAAUUUUCGGUAUUCCGACGUCACGAUAUGGAUAUAUGGAUACGGAUACAUG------
.......(((((((...))-)))))....((((.(((.(((((.....)))))((..((((.......((((....))))......))))..)).....))).)))).......------ ( -25.32)
>consensus
CUUAAACGAACGACGUCGU_CGUUUAUUGUCGUCUCCCAUUCGCCUCUCGGUGUUUGUGUCUCAAU_UUCGGUAUUCCGACG__AC_AU_U__AU__AUGGAU___GAUAU______AUA
..((((((.(((....))).)))))).((((..........((((....))))...............((((....))))..........................)))).......... (-12.06 = -12.10 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:44 2006