| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,744,509 – 16,744,606 |
| Length | 97 |
| Max. P | 0.998614 |
| Location | 16,744,509 – 16,744,606 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.28 |
| Mean single sequence MFE | -31.24 |
| Consensus MFE | -25.96 |
| Energy contribution | -25.32 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.11 |
| Structure conservation index | 0.83 |
| SVM decision value | 3.16 |
| SVM RNA-class probability | 0.998614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16744509 97 + 22224390 -----------U-AUAU----------ACUAUAC-CAUAUAUGCACAUAUACGCACUCGAUCCUAACCGAGUCAGCUUGGGGCAGAUCAGUGCAGAUUGUAUUGUGUCUUGGGUGUUUAA -----------.-....----------...((((-(......(((((.(((((((((.((((....(((((....)))))....))))))))).....)))))))))....))))).... ( -28.70) >DroSec_CAF1 31859 97 + 1 -----------C--UAU----------ACUAUACCCAUAUAUGCACAUAUACGCACUCGAUCCUAACCGAGUCAGCUUGGGUCAGAUCAGUGCAGAUUGUAUUGUGUCUUGGGUGUUUAA -----------.--...----------...(((((((.....(((((.(((((((((.((((....(((((....)))))....))))))))).....)))))))))..))))))).... ( -32.80) >DroSim_CAF1 30187 97 + 1 -----------C--UAU----------ACUAUACCCAUAUAUGCACAUAUACGCACUCGAUCCUAACCGAGUCAGCUUGGGGCAGAUCAGUGCAGAUUGUAUUGUGUCUUGGGUGUUUAA -----------.--...----------...(((((((.....(((((.(((((((((.((((....(((((....)))))....))))))))).....)))))))))..))))))).... ( -32.80) >DroEre_CAF1 23323 93 + 1 ---------------------------ACUAUAUACAUAUGUGCACAUAUACGCACUCGAUCCUAACCGAGUCAGCUUGGGGCAGAUCAGUGCAGAUUGUAUUGUGUCUUGGGUGUUUAA ---------------------------....((.((((....(((((.(((((((((.((((....(((((....)))))....))))))))).....))))))))).....)))).)). ( -27.00) >DroYak_CAF1 23316 119 + 1 CACACACACCAUAAUAUACUAUACUUCACUAUAC-UAUAUAUGCACAUGUACGCACUCGAUCCUAACCGAGUCAGCUUGGGGCAGAUCAGUGCAGAUUGUAUUGUGCCUUGGGUGUUUAA ...((((.(((..(((((.((((......)))).-)))))..(((((.(((((((((.((((....(((((....)))))....))))))))).....)))))))))..))))))).... ( -34.90) >consensus ___________C__UAU__________ACUAUAC_CAUAUAUGCACAUAUACGCACUCGAUCCUAACCGAGUCAGCUUGGGGCAGAUCAGUGCAGAUUGUAUUGUGUCUUGGGUGUUUAA ..............................((((.((.....(((((.(((((((((.((((....(((((....)))))....))))))))).....)))))))))..)).)))).... (-25.96 = -25.32 + -0.64)
| Location | 16,744,509 – 16,744,606 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.28 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -19.30 |
| Energy contribution | -19.50 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16744509 97 - 22224390 UUAAACACCCAAGACACAAUACAAUCUGCACUGAUCUGCCCCAAGCUGACUCGGUUAGGAUCGAGUGCGUAUAUGUGCAUAUAUG-GUAUAGU----------AUAU-A----------- ............(.((((((((.....((((((((((...((.((....)).))...))))).))))))))).)))))((((((.-.....))----------))))-.----------- ( -22.00) >DroSec_CAF1 31859 97 - 1 UUAAACACCCAAGACACAAUACAAUCUGCACUGAUCUGACCCAAGCUGACUCGGUUAGGAUCGAGUGCGUAUAUGUGCAUAUAUGGGUAUAGU----------AUA--G----------- ......(((((...((((((((.....((((((((((((((..((....)).))))).)))).))))))))).))))......))))).....----------...--.----------- ( -25.60) >DroSim_CAF1 30187 97 - 1 UUAAACACCCAAGACACAAUACAAUCUGCACUGAUCUGCCCCAAGCUGACUCGGUUAGGAUCGAGUGCGUAUAUGUGCAUAUAUGGGUAUAGU----------AUA--G----------- ......(((((...((((((((.....((((((((((...((.((....)).))...))))).))))))))).))))......))))).....----------...--.----------- ( -25.20) >DroEre_CAF1 23323 93 - 1 UUAAACACCCAAGACACAAUACAAUCUGCACUGAUCUGCCCCAAGCUGACUCGGUUAGGAUCGAGUGCGUAUAUGUGCACAUAUGUAUAUAGU--------------------------- ...........................((((((((((...((.((....)).))...))))).)))))...((((((((....))))))))..--------------------------- ( -21.50) >DroYak_CAF1 23316 119 - 1 UUAAACACCCAAGGCACAAUACAAUCUGCACUGAUCUGCCCCAAGCUGACUCGGUUAGGAUCGAGUGCGUACAUGUGCAUAUAUA-GUAUAGUGAAGUAUAGUAUAUUAUGGUGUGUGUG ....(((((((..(((((.(((.....((((((((((...((.((....)).))...))))).))))))))..)))))((((((.-((((......)))).))))))..))).))))... ( -33.20) >consensus UUAAACACCCAAGACACAAUACAAUCUGCACUGAUCUGCCCCAAGCUGACUCGGUUAGGAUCGAGUGCGUAUAUGUGCAUAUAUG_GUAUAGU__________AUA__A___________ ............(.((((((((.....((((((((((...((.((....)).))...))))).))))))))).))))).......................................... (-19.30 = -19.50 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:41 2006