Locus 6715

Sequence ID X_DroMel_CAF1
Location 16,742,454 – 16,742,559
Length 105
Max. P 0.598879
window10954

overview

Window 4

Location 16,742,454 – 16,742,559
Length 105
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 83.49
Mean single sequence MFE -22.37
Consensus MFE -18.19
Energy contribution -17.97
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 0.81
SVM decision value 0.13
SVM RNA-class probability 0.598879
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16742454 105 - 22224390
------UUUCAUCAAUGUGGAUGGGCGAUUAUUGCACAAAGAGUUGUAAGAAUUAGUAUUUUCUUUCUUUACUAUGUGAACAUAGUAUUUUCGCUCGUUUAGCGUAAACAG
------........((((((((((((((............(((....(((((........))))).)))(((((((....)))))))...))))))))))).)))...... ( -25.50)
>DroSec_CAF1 29966 93 - 1
UUUCUAUUUCAUCAAUGUGGAUGGGCGAUUAUUGCACAAAGAGUUGUAAGAAUUAC------------------UGUGAACAUAGUAUUUUCGCUCAUUUAGCGUAAACAG
..............((((((((((((((...(((((........)))))....(((------------------(((....))))))...))))))))))).)))...... ( -20.80)
>DroSim_CAF1 28163 93 - 1
UUUCUAUUUCAUCAAUGUGGAUGGGCGAUUAUUGCACAAAGAGUUGUAAGAAUUAC------------------UGUGAACAUAGUAUUUUCGCUCAUUUAGCGUAAACAG
..............((((((((((((((...(((((........)))))....(((------------------(((....))))))...))))))))))).)))...... ( -20.80)
>consensus
UUUCUAUUUCAUCAAUGUGGAUGGGCGAUUAUUGCACAAAGAGUUGUAAGAAUUAC__________________UGUGAACAUAGUAUUUUCGCUCAUUUAGCGUAAACAG
..............((((((((((((((....(((((((....))))...........................((....))..)))...))))))))))).)))...... (-18.19 = -17.97 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:35 2006