Locus 6714

Sequence ID X_DroMel_CAF1
Location 16,740,316 – 16,740,423
Length 107
Max. P 0.835615
window10953

overview

Window 3

Location 16,740,316 – 16,740,423
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.72
Mean single sequence MFE -30.37
Consensus MFE -21.42
Energy contribution -21.80
Covariance contribution 0.38
Combinations/Pair 1.19
Mean z-score -1.83
Structure conservation index 0.71
SVM decision value 0.73
SVM RNA-class probability 0.835615
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16740316 107 + 22224390
AUUGCGGUUCACUGCAAAUUAUGCGACACGAUUCGCAAA-AACACCAUCGAGACUAUGGCACU-----------AUGCGAUUGCCAAACCA-GUGGUGAUUGCCUGCAAGAAAAAAAUGA
.((((((....))))))....(((((......)))))..-..................(((..-----------..(((((..(((.....-.)))..))))).)))............. ( -27.10)
>DroSec_CAF1 27879 109 + 1
AUUGCGGUUCACUGCAAAUUAUGCGACACGAUUCGCAA--AACACCAUCGAGAG-GUGGGACUAUGU-----GUAUGCGAUUGCCAAACCC-GUGCUGAUUGCCUGCAAAAAAGAAA--A
.((((((....))))))....(((((......))))).--....(((((....)-))))..((...(-----(((.(((((((((......-).)).)))))).))))....))...--. ( -31.50)
>DroSim_CAF1 26055 109 + 1
AUUGCGGUUCACUGCAAAUUAUGCGACACGAUUCGCAA--AACACCAUCGAGAG-GUGGCACUAUGU-----GUAUGCGAUUGCCAAACCC-GUGGUGAUUGCCUGCAAAAAAGAAA--A
.((((((....))))))....(((((......))))).--....(((((....)-))))..((...(-----(((.(((((..(((.....-.)))..))))).))))....))...--. ( -36.90)
>DroEre_CAF1 19309 101 + 1
AUUGCGGUUCACUGCAAAUUAUGCGACACGAUUCGCAA--AACACCGUCAAGA--GUGGCACUAGGU-----GCUUGCGAUUGCCAAACCC-GCGGUGACUGCCUGCAAG---------C
.((((((((((((((.......((((......((((((--..((((((((...--.))))....)))-----).)))))))))).......-)))))))..))).)))).---------. ( -31.94)
>DroYak_CAF1 19348 103 + 1
AUUGCGGUUCACUGCAAAUUAUGCGACACGAUUCGCAAAAAACACCGUCAAGA--GUGGCACCAUGCGACGAGUAUGCGAUUGCCAAACCCUGCAAUAA------GAAUG---------A
.((((((....))))))....(((((......))))).........((.....--.(((((((((((.....))))).)..)))))......)).....------.....---------. ( -24.40)
>consensus
AUUGCGGUUCACUGCAAAUUAUGCGACACGAUUCGCAA__AACACCAUCGAGA__GUGGCACUAUGU_____GUAUGCGAUUGCCAAACCC_GUGGUGAUUGCCUGCAAGAAA_AAA__A
.((((((....))))))....(((((......))))).....((((((........(((((.(((((.....)))))....)))))......))))))...................... (-21.42 = -21.80 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:34 2006