Locus 6712

Sequence ID X_DroMel_CAF1
Location 16,738,130 – 16,738,243
Length 113
Max. P 0.981032
window10950

overview

Window 0

Location 16,738,130 – 16,738,243
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.27
Mean single sequence MFE -25.02
Consensus MFE -20.22
Energy contribution -19.90
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -2.29
Structure conservation index 0.81
SVM decision value 1.88
SVM RNA-class probability 0.981032
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16738130 113 - 22224390
---GCGGAGGCUUGAGAAAACUAUUUAGUUUUUUCCAAUAUAAUUCCACAAUAUUUAUU----CCGAAGAUGAGCAAAUUGCAAUUAGCAUCAAUUUGCGAACUAUCUAAUUGAUAAGCA
---((((((....(((((((((....)))))))))........)))).......(((((----....(((((.(((((((((.....)))...))))))....)))))....))))))). ( -23.30)
>DroSec_CAF1 25724 116 - 1
---GCGGAGGC-UGAGAAAACUAUUUAGUUUUUUCCAAUAUAAUUCCACAAUAUUUAUUUCCCCCUUCGACGAGCAAAUUGCAAUUAGCAUCAAUUUGCGAACUAUCUAAUUGAUAAGCA
---(((((((.-.(((((((((....))))))))).(((((.........)))))........))))).....(((((((((.....)))...))))))....((((.....)))).)). ( -22.80)
>DroSim_CAF1 24094 116 - 1
---GCGGAGGC-UGAGAAAACUAUUUAGUUUUUUCCAAUAUAAUUCCACAAUAUUUAUUUCCCCCUUCGACGAGCAAAUUGCAAUUAGCAUCAAUUUGCGAACUAUCUAAUUGAUAAGCA
---(((((((.-.(((((((((....))))))))).(((((.........)))))........))))).....(((((((((.....)))...))))))....((((.....)))).)). ( -22.80)
>DroEre_CAF1 17121 115 - 1
---GAGGAGGC-UGAGAAAACUAUUUAGUUUUUUCCAAUAAAAUUCCACAAUAUUUAUUUCCAC-CUCGAAGAGCAAAUUGCAAUUAGCAGCAAUUUGCGAACUAUCUAAUUGAUAAGCU
---((((.((.-.(((((((((....))))))))).((((((...........)))))).)).)-))).....(((((((((........)))))))))....((((.....)))).... ( -28.20)
>DroYak_CAF1 17151 114 - 1
GCUUAGGAGGC-UGAGAAAACUAUUUAGUUUUUUUCAAUAAAACUCCACAAUAUUUAUUA-----AUCGAAGAGCAAAUUGCAAUUAGCAGCAAUUUGCGAACUAUCUAAUUGAUAAGCU
(((((((((..-((((((((((....)).))))))))......)))).((((........-----........(((((((((........)))))))))((....))..)))).))))). ( -28.00)
>consensus
___GCGGAGGC_UGAGAAAACUAUUUAGUUUUUUCCAAUAUAAUUCCACAAUAUUUAUUUCC_CCUUCGAAGAGCAAAUUGCAAUUAGCAUCAAUUUGCGAACUAUCUAAUUGAUAAGCA
.....((((....(((((((((....)))))))))........))))..........................((((((((..........))))))))....((((.....)))).... (-20.22 = -19.90 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:31 2006