Locus 6707

Sequence ID X_DroMel_CAF1
Location 16,729,914 – 16,730,034
Length 120
Max. P 0.968376
window10940

overview

Window 0

Location 16,729,914 – 16,730,034
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.82
Mean single sequence MFE -22.70
Consensus MFE -20.94
Energy contribution -20.82
Covariance contribution -0.12
Combinations/Pair 1.05
Mean z-score -1.71
Structure conservation index 0.92
SVM decision value 1.62
SVM RNA-class probability 0.968376
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16729914 120 - 22224390
AAAGAAACUUGUCAAACAAACAAUAAAAAUCGGUUAUUGGUUGUACAUUGCGCAAAUUGAUAUCAACCUCUAAUUGCAUAUUAAUUAACCGCGAACUUGGCGAAAAUUUUCCACCAGCGC
...((((.(((((((((((.((((((.......)))))).))))...(((((..((((((((((((.......))).)))))))))...)))))..)))))))....))))......... ( -21.90)
>DroSec_CAF1 10695 118 - 1
AAAGAAACUUG-CAAACAAACAAUAA-AAUCGGUUAUUGGUUGUACAUUGCGCAAAUUGAUAUCAACCUCUAAUUGCAUAUUAAUUAACCGCGAACUUGGCGAAAAUUUUCCACCAGCGC
...........-...((((.((((((-......)))))).)))).....((((.((((((((((((.......))).)))))))))...(((.......)))..............)))) ( -20.20)
>DroSim_CAF1 14637 119 - 1
AAAGAAACUUGUCAAACAAACAAUAA-AAUCGGUUAUUGGUUGUACAUUGCGCAAAUUGAUAUCAACCUCUAAUUGCAUAUUAAUUAACCGCGAACUUGGCGAAAAUUUUCCACCAGCGC
...((((.(((((((((((.((((((-......)))))).))))...(((((..((((((((((((.......))).)))))))))...)))))..)))))))....))))......... ( -22.40)
>DroEre_CAF1 9189 119 - 1
AAGGAAACUUGUCAAACAAACAAUAA-AAUCGAUUAUUGGUUGUACAUUGCGCAAAUUGAUAUCAACCUCUAAUUGCAUAUUAAUUAACCGCGAACUUGGCAAAAAUUUUCCACCAGCGC
..(((((.(((((((((((.((((((-......)))))).))))...(((((..((((((((((((.......))).)))))))))...)))))..)))))))....)))))........ ( -26.90)
>DroYak_CAF1 9681 119 - 1
AAAGAAACUUGUCAAACAAACAAUAA-AAUCGAUUAUUGGUUGUACAUUGCGCAAAUUGAUAUCAGCCUCUAAUUGCAUAUUAAUUAACCGCGAACUUGGCGAAAAUUUUCCACCAGCGC
...((((.(((((((((((.((((((-......)))))).))))...(((((..((((((((((((.......))).)))))))))...)))))..)))))))....))))......... ( -22.10)
>consensus
AAAGAAACUUGUCAAACAAACAAUAA_AAUCGGUUAUUGGUUGUACAUUGCGCAAAUUGAUAUCAACCUCUAAUUGCAUAUUAAUUAACCGCGAACUUGGCGAAAAUUUUCCACCAGCGC
...((((.(((((((((((.((((((.......)))))).))))...(((((..((((((((((((.......))).)))))))))...)))))..)))))))....))))......... (-20.94 = -20.82 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:22 2006