Locus 6705

Sequence ID X_DroMel_CAF1
Location 16,729,020 – 16,729,121
Length 101
Max. P 0.606285
window10938

overview

Window 8

Location 16,729,020 – 16,729,121
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.32
Mean single sequence MFE -19.04
Consensus MFE -4.85
Energy contribution -6.50
Covariance contribution 1.65
Combinations/Pair 1.18
Mean z-score -1.87
Structure conservation index 0.25
SVM decision value 0.15
SVM RNA-class probability 0.606285
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16729020 101 + 22224390
ACUUUGCAUGAAA----------------GGAUCACCAAUUAUAUUUAGUGA---UGAUUCACCGAAACAUAUUUUCCUUCUAAUUAAGUCUUAAUGAACUCGAUCUCUUUUCGGUUCUU
((((.....(((.----------------(((.....(((....((..((((---....))))..))....))).)))))).....))))......((((.(((.......))))))).. ( -14.80)
>DroSec_CAF1 9824 104 + 1
ACUUUGUAUGAAA----------------GGAUCACCAAUUAUAUUUAGUGAUGAUGAUUCAUCGCAACAUAUUUUCCUUCUAAUUAAGUCUUAAUGAACUCGAUCUCUUUUCGGUUCGU
((((.....(((.----------------(((.........((((...(((((((....)))))))...))))..)))))).....))))....((((((.(((.......))))))))) ( -20.50)
>DroSim_CAF1 13757 104 + 1
ACUUUGCAUGAAA----------------GGAUCACCAAUUAUAUUUAGUGAUGAUGAUUCAUCGCAACAUAUUUUCCUUCUAAUUAAGUCUUAAUGAACUCGAUCUCUUUUUGGUUCGU
((((.....(((.----------------(((.........((((...(((((((....)))))))...))))..)))))).....))))....(((((((.((......)).))))))) ( -18.40)
>DroEre_CAF1 8430 89 + 1
GCUUUGCAUGAAAUUCU----------------------UCAGAUU---------UAAUUAAUUGAAACAUAUUUUCCUUUUAAUUAAGUCCUAAUGAAUCCGAUCUCUUUUGGGUUCAU
........((((....)----------------------)))((((---------(((((((..((((.....))))...)))))))))))...((((((((((......)))))))))) ( -21.00)
>DroYak_CAF1 8901 115 + 1
ACUUUGCAUGGAAUUCUCUCCAUUCAAAAGGAUCACCAAUUAUAUUUAGUGA---UGAUUCAUCGAAACAUAUUUUCCUUCUAAUUAAGUCUUAAUGAACUCGAUCUUU--UUGGUUCUU
.......(((((......)))))(((((((((((....(((((.....))))---)(((((((..(.((..(((........)))...)).)..))))).)))))))))--))))..... ( -20.50)
>consensus
ACUUUGCAUGAAA________________GGAUCACCAAUUAUAUUUAGUGA___UGAUUCAUCGAAACAUAUUUUCCUUCUAAUUAAGUCUUAAUGAACUCGAUCUCUUUUCGGUUCGU
((((.....(((.................((((((...((((....)))).....))))))...((((.....)))).))).....))))......((((.(((.......))))))).. ( -4.85 =  -6.50 +   1.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:20 2006