Locus 6703

Sequence ID X_DroMel_CAF1
Location 16,727,822 – 16,727,929
Length 107
Max. P 0.983648
window10935

overview

Window 5

Location 16,727,822 – 16,727,929
Length 107
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 90.16
Mean single sequence MFE -30.20
Consensus MFE -27.50
Energy contribution -26.62
Covariance contribution -0.88
Combinations/Pair 1.21
Mean z-score -2.30
Structure conservation index 0.91
SVM decision value 1.95
SVM RNA-class probability 0.983648
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16727822 107 - 22224390
CUUAAUAAACGAAAUGCGAACGGCGAAUGGCG-------AAUGGCCCACGAUGUGUACUCCGUGUGUUUGCUCUUCUCAUUUUGAUUAAAUGCUGU--UCUGUAUUUAAUCAAAUG
..........((((((.(((.((((((((((.-------....)))((((..(....)..)))).))))))).))).))))))((((((((((...--...))))))))))..... ( -32.20)
>DroSec_CAF1 8604 107 - 1
CUUAAUAAACGAAAUGCGAACGGCGAACGGCG-------AAUGGCCCACGAUGUGUACUCCGCGUGUUUGCUCUUUUCAUUUUGAUUAAAUGCUGU--UCUGUAUUUAAUCAAAUG
..........((((.((((((((((...(((.-------....)))(((...))).....))).)))))))...))))..(((((((((((((...--...))))))))))))).. ( -31.90)
>DroEre_CAF1 7214 115 - 1
CUUAAUAAGCAAAAUGCGAACGGCGAACGGCGAAUGGCGAAUGGCCAACGAUGUGUACUCUGCGUGUUUACUCUUCUCAUUUUGAUUAAAUGCUGUU-UCUGUAUUUAAUCAAAUG
..........((((((.(((.((..(((((((..((((.....))))..((.(....)))))).))))..)).))).))))))((((((((((....-...))))))))))..... ( -28.20)
>DroYak_CAF1 7664 109 - 1
CUUAAUAAACAAAAUGCGAACGGCGAACGGCG-------AAUGGCCCACGAUGUGUACUCUACAUAUUUGCUCUUCCCAUUUUGAUUAAAUGCUGUUUUCUGUAUUUAAUCAAAUG
..........((((((.(((.((((((.(((.-------....))).....((((((...)))))))))))).))).))))))((((((((((........))))))))))..... ( -28.50)
>consensus
CUUAAUAAACAAAAUGCGAACGGCGAACGGCG_______AAUGGCCCACGAUGUGUACUCCGCGUGUUUGCUCUUCUCAUUUUGAUUAAAUGCUGU__UCUGUAUUUAAUCAAAUG
..........((((((.(((.((((((((((............)))....(((((.....)))))))))))).))).))))))((((((((((........))))))))))..... (-27.50 = -26.62 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:18 2006