| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,727,192 – 16,727,312 |
| Length | 120 |
| Max. P | 0.739869 |
| Location | 16,727,192 – 16,727,312 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.50 |
| Mean single sequence MFE | -36.03 |
| Consensus MFE | -24.00 |
| Energy contribution | -25.23 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16727192 120 + 22224390 ACAUUGUUUGUCCGCUCGUUCUGUUUAUUUGCCUGUUUGCACUCCAAACUGUUACCCGGGAUAGUUGGCAGUGCAAAUAGACAAGACCCUGGGAUGCAUUUUCACUUUGAAAACAGAAAU ..................((((((((.((((.(((((((((((((((.(((((......))))))))).))))))))))).))))....((..(.....)..))......)))))))).. ( -35.40) >DroEre_CAF1 6601 113 + 1 ACAUUGUUUGCCCGGUCGUUCUGUUUAUUUGCCUGUUUGCACUCAAGAGUAUUCUCCGGGAUAGUUGGCAGUGCAAAUAGAUAAGACCCUGGGAUGCACUUCCAUUGCG-------AAUU ....(((...(((((..((..(((((((((((((((..(((..(..(((....)))..)..).))..)))).)))))))))))..)).)))))..)))...........-------.... ( -35.40) >DroYak_CAF1 7032 119 + 1 ACAUUGUUUGCCCGCUCGUUCGGUUUAUUUGCCUGUUUGCACUCAAAACUAUUCUCCGGGAUAGUUGGCAGUGCAG-UUGAUAAGAACCGGGGAUGCUCAUCCAUUGCGAGUACGGAAUU ...........(((((((((((((((..(((.(...(((((((...((((((((....))))))))...)))))))-..).))))))))))((((....))))...)))))..))).... ( -37.30) >consensus ACAUUGUUUGCCCGCUCGUUCUGUUUAUUUGCCUGUUUGCACUCAAAACUAUUCUCCGGGAUAGUUGGCAGUGCAAAUAGAUAAGACCCUGGGAUGCACUUCCAUUGCGA__AC_GAAUU .....((...((((...(((.((((((((((((((((.........((((((((....))))))))))))).))))))))))).)))..))))..))....................... (-24.00 = -25.23 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:17 2006