Locus 6700

Sequence ID X_DroMel_CAF1
Location 16,726,102 – 16,726,222
Length 120
Max. P 0.985915
window10932

overview

Window 2

Location 16,726,102 – 16,726,222
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.92
Mean single sequence MFE -28.42
Consensus MFE -26.64
Energy contribution -27.16
Covariance contribution 0.52
Combinations/Pair 1.06
Mean z-score -1.65
Structure conservation index 0.94
SVM decision value 2.02
SVM RNA-class probability 0.985915
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16726102 120 + 22224390
AAUUUCGAGUCGAAUGCUCAUGCAAAUGCAAUAUAAUCGGAAUUCAUAUGCAUCAAUUACAAUGUGUAUUAUAGUGGUCACAGCUGAUGUGAGCCGAUCGAAUGUGUUUGCAUCAUAAAC
......((((.....))))(((((((((((.(...(((((.....((((((((........))))))))........(((((.....))))).)))))..).)))))))))))....... ( -29.60)
>DroSec_CAF1 6961 120 + 1
AAUUUCGAGUCGAAUGCUCAUGCAAAUGCAAUAUAAUCGGAAUUCAUAUGCAUCAAUUACAAUGUGUAUUAUAGUGGUCACAGCUGAUGUGAGCCGAUCGAAUGUGUUUGCAUCAUAAAC
......((((.....))))(((((((((((.(...(((((.....((((((((........))))))))........(((((.....))))).)))))..).)))))))))))....... ( -29.60)
>DroSim_CAF1 6353 120 + 1
AAUUUCGAGUCGAAUGCUCAUGCAAAUGCAAUAUAAUCGGAAUUCAUAUGCAUCAAUUACAAUGUGUAUUAUAGUGGUCACAGCUGAUGUGAGCCGAUCGAAUGUGUUUGCAUCAUAAAC
......((((.....))))(((((((((((.(...(((((.....((((((((........))))))))........(((((.....))))).)))))..).)))))))))))....... ( -29.60)
>DroEre_CAF1 5627 117 + 1
AAUUUCAAGUCGAAUGCUCAUGCAAAUGCAAUA---UCGGAAUUCAUAUGCAUCAAUUACAAUGUGUAAUAUAAUGGUCACAGCCGAUGUGAGUCGAUCGAAUGUGUUUGCAUUAUAAAA
...................(((((((((((..(---(((..((((((((......(((((.....)))))....((((....))))))))))))))))....)))))))))))....... ( -24.90)
>DroYak_CAF1 5913 120 + 1
AAUUUCGAGUCGAAUGCUCAUGCAAAUGCAAUAUAGUCGGAAUUCAUAUGCAUCAAUUACAAUGAGUAUUAUAAUGGUCACAGCUGAUGUGAGCCGAUCGAAUGUGUUUGCAUCAUAAAC
......((((.....))))(((((((((((.(...(((((...((((((((.(((.......)))))))....))))(((((.....))))).)))))..).)))))))))))....... ( -28.40)
>consensus
AAUUUCGAGUCGAAUGCUCAUGCAAAUGCAAUAUAAUCGGAAUUCAUAUGCAUCAAUUACAAUGUGUAUUAUAGUGGUCACAGCUGAUGUGAGCCGAUCGAAUGUGUUUGCAUCAUAAAC
......((((.....))))(((((((((((.(...(((((.....((((((((........))))))))........(((((.....))))).)))))..).)))))))))))....... (-26.64 = -27.16 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:15 2006