Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 311,363 – 311,457 |
Length | 94 |
Max. P | 0.999848 |
Location | 311,363 – 311,457 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 95.32 |
Mean single sequence MFE | -21.85 |
Consensus MFE | -20.16 |
Energy contribution | -20.16 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -2.61 |
Structure conservation index | 0.92 |
SVM decision value | 4.24 |
SVM RNA-class probability | 0.999848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 311363 94 - 22224390 ACUCCCCUGUUCUUUGGACAUUCGAAUCGAAGAAUCAAUGUUUACCCAAAACAUGAAAAGGAACAGGACAAACGCCCCAAGCAAACAAUGGCAU .....((((((((((.((..((((...))))...)).((((((.....))))))...))))))))))......(((.............))).. ( -20.72) >DroSec_CAF1 54359 94 - 1 ACUCCCCUGUUCUUUGGACAUUCGAAUCGAAGGAUCAAUGUUUACCCAAAACAUAAAAAGGAACAGGACCAACGCCCCAAGCAAACAAUGGCAU .....((((((((((........((.((....)))).((((((.....))))))...))))))))))......(((.............))).. ( -21.82) >DroSim_CAF1 75009 94 - 1 ACUCCCCUGUUCUUUGGACAUUCGAAUCGAAGGAUCAAUGUUUACCCAAAACAUAAAAAGGAACAGGACCAACGCCCCAAGCAAACAAUGGCAU .....((((((((((........((.((....)))).((((((.....))))))...))))))))))......(((.............))).. ( -21.82) >DroEre_CAF1 55101 94 - 1 ACUCCCCUGUUCCUUGGACAUUCGAAUCGAAGGAUCAAUGUUUACCCAAAACAUAAAGAGGAACAGGACAAACGCCCCAAGCAAACAAUGGCAU .....((((((((((........((.((....)))).((((((.....))))))...))))))))))......(((.............))).. ( -24.92) >DroYak_CAF1 75561 94 - 1 ACUCCCCUGUUCUUUGGACAUUCGAAUCGAAGGAUCGAUGUUAACCUAAAACAUAAAGAGAAACAGGACAAACGCCCCAAGCAAACAAUGGCUU .....((((((((((.(((((.(((.((....))))))))))..............)))).))))))......(((.............))).. ( -19.98) >consensus ACUCCCCUGUUCUUUGGACAUUCGAAUCGAAGGAUCAAUGUUUACCCAAAACAUAAAAAGGAACAGGACAAACGCCCCAAGCAAACAAUGGCAU .....((((((((((.((..((((...))))...)).((((((.....))))))...))))))))))......(((.............))).. (-20.16 = -20.16 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:50 2006