Locus 6698

Sequence ID X_DroMel_CAF1
Location 16,723,811 – 16,723,917
Length 106
Max. P 0.618134
window10928

overview

Window 8

Location 16,723,811 – 16,723,917
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 67.25
Mean single sequence MFE -21.30
Consensus MFE -6.36
Energy contribution -7.72
Covariance contribution 1.36
Combinations/Pair 1.21
Mean z-score -1.92
Structure conservation index 0.30
SVM decision value 0.17
SVM RNA-class probability 0.618134
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16723811 106 + 22224390
C-----GCCUGGAUUUGUGCCUUUCUAUGCAUUCUGCAAUCCCUUCGAGGGAUUCAGGU--AUAAUUCCUUAUACCCUAAAAUCCUUA----UAUAUU---UUUUAUAACCACUUAACAC
.-----....(((.((((((((.....(((.....)))(((((.....)))))..))))--)))).)))...................----......---................... ( -21.60)
>DroSec_CAF1 4734 100 + 1
C-----GCCUGGAUUUUUGCCUUGCUAUGCAUUCUGCACUCCCUUCGAGGAACUUCCGU--AUAAAUCCUUAUACCUUAAUAUCCUGG----UAUUUUCAGUUUUA---------AAUUU
.-----(((.((((.....(((((...(((.....))).......))))).......((--((((....))))))......)))).))----).............---------..... ( -16.60)
>DroSim_CAF1 4135 100 + 1
C-----GCCUGGAUUUUUGCCUUGCUAUGCAUUCUGCACUCCCUUCGAGGAACUCGGGU--AUAAAUCCUUAUACCUUAAUAUCCUGG----UAUUUUCAGUUUUA---------CAUUU
.-----..(((((....((((......(((.....))).........((((....((((--((((....)))))))).....))))))----))..))))).....---------..... ( -21.50)
>DroEre_CAF1 3378 104 + 1
UAUUGGAGCUGCAUUAUUGGCUUGCUAUGCAUUCUGCAAACCCUUCGAGGGACUCAGGUCUAUAAAAAC--AGUCCUUAAAAUCUUGGGCAUUGUCUCAAAUCAUA--------------
..(((..((....((((.((((((...(((.....)))..(((.....)))...)))))).))))....--.((((..........))))...))..)))......-------------- ( -22.60)
>DroYak_CAF1 3659 96 + 1
C-----GGCUGGAUUAUUGGCUUGCUUUGCAUUCUGCAAUCCCUGCAAGGGACACAGGU--AUAAAAGC--AU----UGAAUCAUUUA--GUUGUCUCAAAUAAUA---------CAUUU
(-----((((((((.(((.(..((((((....((((...((((.....))))..)))).--...)))))--).----).))).)))))--))))............---------..... ( -24.20)
>consensus
C_____GCCUGGAUUUUUGCCUUGCUAUGCAUUCUGCAAUCCCUUCGAGGGACUCAGGU__AUAAAUCCUUAUACCUUAAAAUCCUGG____UAUCUUAAAUUUUA_________AAUUU
....(((((((................(((.....))).((((.....))))..)))))))........................................................... ( -6.36 =  -7.72 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:11 2006