Locus 6697

Sequence ID X_DroMel_CAF1
Location 16,723,497 – 16,723,613
Length 116
Max. P 0.565788
window10927

overview

Window 7

Location 16,723,497 – 16,723,613
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.65
Mean single sequence MFE -32.48
Consensus MFE -25.48
Energy contribution -25.84
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.78
SVM decision value 0.06
SVM RNA-class probability 0.565788
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16723497 116 - 22224390
CAAAAACAUUUU-GGAAAAAAACGGAGUAGAGAACGCUGAAAAUAAACU---AAAGCGGGGCAAUUCAGCAUUCGGCGGGCGUAAUCCGGAAGGUCGGAGCCCGGAUUCGUCCGGAAGUG
.....((.((((-(((..((..(...((...(((.((((((......((---......))....)))))).))).))((((.....((....)).....)))))..))..))))))))). ( -32.60)
>DroSec_CAF1 4421 115 - 1
CAAAAACAUUUA-GGAAAAAAACGGAGUAGAGAACGCUGCAAACA-ACA---AAAGCGGGGCAAUUCAGCAUUCGGCGGGCGUAAUCCGGAAGGUCGGAGCCCGGAUUCGUCCGGAAGUG
......(((((.-(((......((((((.(((..(.((((.....-...---...)))).)...))).)).)))).(((((.....((....)).....)))))......)))..))))) ( -32.20)
>DroSim_CAF1 3821 115 - 1
CAAAAACAUUUU-GGAAAAAAACGGAGUAGAGAACGCUGCAAACA-ACA---AAAGCGGGGCAAUUCAGCAUUCGGCGGGCGUAAUCCGGAAGGUCGGAGCCCGGACUCGUCCGGAAGUG
.....((.((((-(((......((((((.(((..(.((((.....-...---...)))).)...))).)).)))).(((((.....((....)).....)))))......))))))))). ( -33.00)
>DroEre_CAF1 3063 116 - 1
CAAAAACAUUUUUGAAAAAAAACGGAGUAGAGAACACUGAAAACA-ACA---AAAGCGGAGCAAUUCAGCAUUCGGCGGGCGUAGUCCGGAAGGUCGGAGCACGGAUUCGUCCGGAAGUG
......(.(((((....))))).)..........((((.......-...---....((((((......)).)))).((((((.((((((....((....)).))))))))))))..)))) ( -27.20)
>DroYak_CAF1 3343 118 - 1
CGAAAACAUUUU-GGAAAAAAACGGUGUAGAGAACACUGAAAACA-ACAACGAAAGCGGACCAAUUCGGCAUGCGGCGGGCGUAAUCCGGAAGGUCGGAGCCCGGAUUCGUCCGGAAGUG
.....((.((((-(((......((((((.....))))))......-....((((.(((..((.....))..)))..(((((.....((....)).....)))))..))))))))))))). ( -37.40)
>consensus
CAAAAACAUUUU_GGAAAAAAACGGAGUAGAGAACGCUGAAAACA_ACA___AAAGCGGGGCAAUUCAGCAUUCGGCGGGCGUAAUCCGGAAGGUCGGAGCCCGGAUUCGUCCGGAAGUG
......((((((..........(((.((.....)).))).................((((..(((((.((.....))((((.....((....)).....)))))))))..)))))))))) (-25.48 = -25.84 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:10 2006