| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,723,077 – 16,723,181 |
| Length | 104 |
| Max. P | 0.642860 |
| Location | 16,723,077 – 16,723,181 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.58 |
| Mean single sequence MFE | -29.62 |
| Consensus MFE | -18.98 |
| Energy contribution | -19.82 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16723077 104 + 22224390 -------AUAGGACUAUG----CUUCAGCUUUAAUCGCAACCCGAAAAGUAUGCUACUGCUCCGAAGCACCCUGCUCCAUU---CUCGGGCCAUUAGGGCA--AGCGAAGCCCAUGCGCU -------...((.((.((----(((..((((((((.((...((((.((....((...((((....))))....))....))---.)))))).)))))))))--)))).)).))....... ( -27.70) >DroSec_CAF1 3982 114 + 1 UCAGCCUAUAGUGCUAUG----CUUCAGCUUUAAUCGCAACCCGAAAAGUAUGCUACAGCUCCGGAGCACCCUGCUCCAUUUCCCCCGGGCCAUUAAAGCA--AGCGAAGCCCACGCGCU .........(((((...(----((((.((((((((.((...(((........((....))...(((((.....)))))........))))).)))))))).--...)))))....))))) ( -34.20) >DroSim_CAF1 3384 112 + 1 UCAGCCUAUAG--CUAUG----CUUCAGCUUUAAUCGCAACCCGAAAAGUAUGCUACAGCUCCGGAGCACCCUGCUCCAUAUUCCCCGGGCCAUUAAAGCA--AGCGAAGCCCACGCGCU ..((((....(--((.((----(((..((((((((.((...(((...(((((((....))...(((((.....))))))))))...))))).)))))))))--)))).)))....).))) ( -33.90) >DroEre_CAF1 2659 100 + 1 ---------AA--C--UUUCCACUUUAGCUUUAAUCGCAACCCGAAAAGUAUGCUACUGA-CCGGAGCACCCUGCUCCAUU---CCCGGGCCAUAAAAACA--AGU-UAUGCCACACGCU ---------..--.--....................((..((((...((((...))))..-..(((((.....)))))...---..)))).(((((.....--..)-))))......)). ( -18.80) >DroYak_CAF1 2899 108 + 1 -------UUAA--CAAUGCCUUGUUUAGCUUUGAUCGCAACCCGUAAAGUAUGCUAGUGCUCCGGAGCAGCCUGCUCCAUU---CCCGGGCCAAAGACACGCGAGUGUGGGCCACGCGCU -------....--(((.((........)).)))...(((((.......)).))).(((((...(((((.....)))))...---....((((....((((....)))).))))..))))) ( -33.50) >consensus _______AUAG__CUAUG____CUUCAGCUUUAAUCGCAACCCGAAAAGUAUGCUACUGCUCCGGAGCACCCUGCUCCAUU___CCCGGGCCAUUAAAGCA__AGCGAAGCCCACGCGCU ...........................((((((((.((...(((........((....))...(((((.....)))))........))))).))))))))....(((.......)))... (-18.98 = -19.82 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:09 2006