Locus 6695

Sequence ID X_DroMel_CAF1
Location 16,721,175 – 16,721,295
Length 120
Max. P 0.612288
window10925

overview

Window 5

Location 16,721,175 – 16,721,295
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.83
Mean single sequence MFE -45.31
Consensus MFE -38.80
Energy contribution -38.48
Covariance contribution -0.32
Combinations/Pair 1.17
Mean z-score -1.27
Structure conservation index 0.86
SVM decision value 0.16
SVM RNA-class probability 0.612288
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16721175 120 - 22224390
UGGUUGAGUACCUGGUGGCGGGCGUGCAGGACCAUGUCGCCCAGCCGUCGGGAGGGAUUGCAGUAGUUGUCCUGGUUGUGGACGAUCGAGUGGUACUGGUUUUUGUAGCUUUCCAGGAAU
(((..((((.((((..((((((((.(((......)))))))).)))..))))((((((..((((((((((((.......))))))).......)))))))))))...)))).)))..... ( -43.81)
>DroSec_CAF1 1420 120 - 1
UGGUUGAGUACCUGGCGGCGGGCGUGCAGGACCAUGUCGCCCAGACGCCGGGAGGGAUUGCAGUAGUUGUCCUGGUUGUGGACGAUCGAGUGGAACUGAUUGUUGUAGCUUUCCAGGAAC
..........(((((((..(((((.(((......))))))))...))))))).................((((((..((.(((((((.((.....)))))))))...))...)))))).. ( -45.40)
>DroSim_CAF1 1682 120 - 1
UGGUUGAGUACCUGGUGGCGGGCGUGCAGGACCAUGUCGCCCAGCCGCCGGGAGGGAUUGCAGUAGUUGUCCUGGUUGUGGACGAUCGAGUGGAACUGAUUGUUGUAGCUUUCCAGGAAC
..........((((((((((((((.(((......)))))))).))))))))).................((((((..((.(((((((.((.....)))))))))...))...)))))).. ( -50.00)
>DroEre_CAF1 1331 120 - 1
UGGUUGAGUACCUGGUGGCGGGCGUGUAGGACCAUGUCGCCCAGCCGCUGAGCGGGAUUGCAGUAGUUGUCCUGGUUGUGCACGAUCGAGUGGUACUGGUUUUUGUAGCUUUUCAGGAAU
.(((((.((((..(((((((((((.............))))).))))))((.((((((.((....)).)))))).)))))).)))))(((.(.(((........))).)..)))...... ( -41.52)
>DroYak_CAF1 1516 120 - 1
UGGUUGAGUACCUGGCGGCGGGCGUGCUGGACCAUGUCGCCCAGCCGCUGGGAGGGAUUGCAGUAGUUGUCCUGGUUAUGCACGAUCGAUUGGUAUUGGUUUUUGUAGUUUUCCAGGAAU
..........((..((((((((((.((........))))))).)))))..)).................((((((...((((.(((((((....)))))))..)))).....)))))).. ( -45.80)
>consensus
UGGUUGAGUACCUGGUGGCGGGCGUGCAGGACCAUGUCGCCCAGCCGCCGGGAGGGAUUGCAGUAGUUGUCCUGGUUGUGGACGAUCGAGUGGUACUGGUUUUUGUAGCUUUCCAGGAAU
(((..((((.((((((((((((((.(((......)))))))).))))))))).(((((.((....)).)))))(((((....)))))....................)))).)))..... (-38.80 = -38.48 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:08 2006