Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,720,982 – 16,721,101 |
Length | 119 |
Max. P | 0.788058 |
Location | 16,720,982 – 16,721,101 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.77 |
Mean single sequence MFE | -32.74 |
Consensus MFE | -17.06 |
Energy contribution | -19.84 |
Covariance contribution | 2.78 |
Combinations/Pair | 1.22 |
Mean z-score | -1.79 |
Structure conservation index | 0.52 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16720982 119 - 22224390 UGCCCAAUUCCGCCAUGGAGCCUUCUUCUGGGUACAAUGGGCA-AUGUCCAAAUGGUGUUUGCACACCUUUUUAUUCAACCGCCUGUUGGACUGCAGGCGGCGAAUCUCAGUCCUCCUCU ((((((..(((.....)))((((......))))....))))))-..........(((((....))))).....((((..((((((((......)))))))).)))).............. ( -37.90) >DroSec_CAF1 1227 119 - 1 UCCCCAAUUCCGCCAUGGAGCUUUCUUCUGGGUACAAUGGGCA-AUGUCCAAAUGGCGUUCGCACACCUUUUUAUUCAACCGCUUGUUGGACUGCAGGCGGCGAAUCUCAGUCCUCCUCU ................((((.......(((((.....((.(((-(((((.....)))))).)).)).......((((..((((((((......)))))))).)))))))))..))))... ( -29.00) >DroSim_CAF1 1483 119 - 1 UCCCCAAUUCCGCCAUGGAGCCUUCUUCUGGGUACAAUGGGCA-AUGUCCAAAUGGCGUUCGCUGACCUUUUUAUUCAACCGCUUGUUGGACUGCAGGCGGCGAAUCUCAGUCCUCCUAU ..........((((((.(.((((......)))).)..(((((.-..))))).))))))(((((((.(((.....((((((.....))))))....))))))))))............... ( -34.10) >DroEre_CAF1 1144 113 - 1 UGCCCAUUUCAACAAUGG---CUUCUUUUGGUCGCCAC---CAAAUG-CGACAUGGAAAUGGCCCACCUUUUGUUCCGUCCGCUUGUUCUCUAGCAGGCGGCGAAGCACCUUCCUUCUCC ...(((((((..(((...---......)))(((((...---.....)-))))...))))))).........((((.((.((((((((......)))))))))).))))............ ( -33.20) >DroYak_CAF1 1338 104 - 1 UGCCAAAUUCU------U---CUUCUUUUGGUCACCAC---CACAUG-UGAAAUGGAAAUUGGCCACUCUUUCUUCCGAUCGCCUGUUCUCCAGCAGGCGGCGAA---UCCUCCUCCUCC .(((((.((((------.---.(((...((((....))---))....-.)))..)))).)))))............((.((((((((......))))))))))..---............ ( -29.50) >consensus UGCCCAAUUCCGCCAUGGAGCCUUCUUCUGGGUACAAUGGGCA_AUGUCCAAAUGGAGUUCGCACACCUUUUUAUUCAACCGCUUGUUGGACUGCAGGCGGCGAAUCUCAGUCCUCCUCU ......((((((((((...((((......))))....(((((....))))).)))))).....................((((((((......)))))))).)))).............. (-17.06 = -19.84 + 2.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:07 2006