Locus 6693

Sequence ID X_DroMel_CAF1
Location 16,720,695 – 16,720,813
Length 118
Max. P 0.617871
window10923

overview

Window 3

Location 16,720,695 – 16,720,813
Length 118
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 85.03
Mean single sequence MFE -26.76
Consensus MFE -18.76
Energy contribution -19.38
Covariance contribution 0.62
Combinations/Pair 1.22
Mean z-score -1.61
Structure conservation index 0.70
SVM decision value 0.17
SVM RNA-class probability 0.617871
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16720695 118 - 22224390
AAAACUUUGGUUGCAUGUUACAAACCGGCAAAUUAUUCUAAAUGCCGCUUCCUUCAUGCAGUAUUUCAC-GAGUGUUGUUUUGAUAGGCAAACAUAUUUUGGUAUUUUACUAUCGAAAC
...((((((((((((((........(((((............))))).......)))))))....))).-))))...((((((((((..(((.((((....))))))).)))))))))) ( -25.26)
>DroSec_CAF1 941 117 - 1
AAAACUUUGGUUGCAUGCUACA-ACCGGCAAGUUAUUCUAAAUGCCGCUUCUUUCAUGCAGUAUUUCGC-AACUGUUGUUUUGGUAGGCCAGCAUAUUUUGGUAUUUUACUAUAGAAAC
(((((..(((((((.((((...-...)))).........((((((.((.........)).)))))).))-)))))..)))))((((((((((......)))))...)))))........ ( -26.40)
>DroSim_CAF1 1207 117 - 1
AAAACUUUGGUUGCAUGCUACA-ACCGGCAAGUUAUUCUAAAUGCCGCUUCUUUCAUGCAGUAUUUCGC-AACUGUUGUUUUGGUAGGCCAGCAUAUUUUGGUAUUUUACUAUCGAAAC
........((((((.((((...-...)))).........((((((.((.........)).)))))).))-))))...(((((((((((((((......)))))......)))))))))) ( -27.80)
>DroEre_CAF1 766 113 - 1
AAAAUGUUGCUUGCAAGCUACA-ACCGGCAAAUUAAUCUAAAUGCCGCC----CCAUGCGGUAUUUUGCCAAGUGCUGUUUUUUCGAACCAACAUAU-UUGGUAUUUUAAUAUCGAAAU
....(((.(((....))).)))-..(((((.........(((((((((.----....))))))))).......)))))...(((((((((((.....-))))).........)))))). ( -27.59)
>consensus
AAAACUUUGGUUGCAUGCUACA_ACCGGCAAAUUAUUCUAAAUGCCGCUUCUUUCAUGCAGUAUUUCGC_AACUGUUGUUUUGGUAGGCCAACAUAUUUUGGUAUUUUACUAUCGAAAC
..........(((((((........(((((............))))).......)))))))................(((((((((((((((......)))))......)))))))))) (-18.76 = -19.38 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:06 2006