Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,719,224 – 16,719,368 |
Length | 144 |
Max. P | 0.951396 |
Location | 16,719,224 – 16,719,335 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.79 |
Mean single sequence MFE | -37.40 |
Consensus MFE | -27.51 |
Energy contribution | -29.95 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.18 |
Mean z-score | -1.49 |
Structure conservation index | 0.74 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16719224 111 - 22224390 GAUGUUUCCACUGGGCUUGCUUCUUCUGCUGGAGUAGUA---------GUAGUGGCUUCACUUGAAGGAGUAGCGACAUUCGCAGGAGUAACUCCAUCACCUGGCGUGGUUUUGUCCGCU ..........(..((..(((((((((...((((((....---------......))))))...)))))))))(((.....))).((((...))))....))..).((((......)))). ( -33.20) >DroSec_CAF1 682 114 - 1 GAUGUUUCCACUGGGGUUGCUUCUUCCACUGGAGUAGUUAUAACUGCUGUAGUGGCUUCACUUGAAGGAGUAGCGACAUU------AGUAACUCCAUCACCUGGCGUGGUCUUGUCCGCU ((((.....(((((.((((((.(((((((((.((((((....)))))).))))))((((....))))))).)))))).))------))).....)))).......((((......)))). ( -41.00) >DroSim_CAF1 601 114 - 1 GAUGUUUCCACUGGGGUUGCUUCUUCCGCUGGAGUAGUUAUAACUGCUGUAGUGGCUUCACUUGAAGGAGUAGCGACAUC------AGUAACUCCAUCAUCUGGCGUGGUCUUGUCCGCU ((((.....((((..((((((.(((((((((.((((((....)))))).))))))((((....))))))).))))))..)------))).....)))).......((((......)))). ( -42.90) >DroEre_CAF1 628 117 - 1 ---GUUUCCAAUGGAGUUGCUUCUUCCGCUAGAGUAGUUACAACUACAGUACUGACUUUAUUUGAAGCAGUCACGACAUCCGCAGGCGUAACUCCACCAGCUGGCGUGGUUUGGUCCGCU ---(((.....(((((((((.(((...((....(((((....))))).((((((.((((....)))))))).)).......))))).)))))))))......)))((((......)))). ( -32.50) >consensus GAUGUUUCCACUGGGGUUGCUUCUUCCGCUGGAGUAGUUAUAACUGCUGUAGUGGCUUCACUUGAAGGAGUAGCGACAUC______AGUAACUCCAUCACCUGGCGUGGUCUUGUCCGCU ...(((.....((((((((((((..((((((.(((((......))))).))))))((((....)))).................))))))))))))......)))((((......)))). (-27.51 = -29.95 + 2.44)
Location | 16,719,264 – 16,719,368 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 76.04 |
Mean single sequence MFE | -31.85 |
Consensus MFE | -19.36 |
Energy contribution | -21.05 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.20 |
Mean z-score | -2.14 |
Structure conservation index | 0.61 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16719264 104 - 22224390 --UCAUUUGCUGGAGUAGCAUUAUUUUCUGAAGACGAUGUUUCCACUGGGCUUGCUUCUUCUGCUGGAGUAGUA---------GUAGUGGCUUCACUUGAAGGAGUAGCGACAUU --....(((((((((..((((..(((.....)))..))))))))).......(((((((((...((((((....---------......))))))...))))))))))))).... ( -26.30) >DroSec_CAF1 716 105 - 1 ----------UGGAGUUGCUUUAUUCUCUGAAGGAGAUGUUUCCACUGGGGUUGCUUCUUCCACUGGAGUAGUUAUAACUGCUGUAGUGGCUUCACUUGAAGGAGUAGCGACAUU ----------((..((((((((.(((..(((((((((.((..((.....))..)).))))((((((.((((((....)))))).)))))))))))...)))))))))))..)).. ( -38.80) >DroSim_CAF1 635 105 - 1 ----------UGGAGUUGCUUUAUUCUCUGAAGACGAUGUUUCCACUGGGGUUGCUUCUUCCGCUGGAGUAGUUAUAACUGCUGUAGUGGCUUCACUUGAAGGAGUAGCGACAUC ----------((..((((((((.(((..(((((..((.((..((.....))..)).))..((((((.((((((....)))))).)))))))))))...)))))))))))..)).. ( -36.30) >DroEre_CAF1 668 106 - 1 CUUCAUUCGCUGAAGUAGCUUUAUUCUCU---------GUUUCCAAUGGAGUUGCUUCUUCCGCUAGAGUAGUUACAACUACAGUACUGACUUUAUUUGAAGCAGUCACGACAUC ........((.((((((((((((((....---------......))))))))))))))....))....(((((....))))).((((((.((((....)))))))).))...... ( -26.00) >consensus __________UGGAGUAGCUUUAUUCUCUGAAGACGAUGUUUCCACUGGGGUUGCUUCUUCCGCUGGAGUAGUUAUAACUGCUGUAGUGGCUUCACUUGAAGGAGUAGCGACAUC ...........((((..........))))......(((((((((...)))(((((((((((...((((((..(((((.....)))))..))))))...))))))))))))))))) (-19.36 = -21.05 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:05 2006