Locus 6691

Sequence ID X_DroMel_CAF1
Location 16,716,568 – 16,716,675
Length 107
Max. P 0.827876
window10920

overview

Window 0

Location 16,716,568 – 16,716,675
Length 107
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 86.27
Mean single sequence MFE -37.80
Consensus MFE -26.91
Energy contribution -29.16
Covariance contribution 2.25
Combinations/Pair 1.17
Mean z-score -2.05
Structure conservation index 0.71
SVM decision value 0.70
SVM RNA-class probability 0.827876
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16716568 107 - 22224390
AUUCACUGGUUUGGCUUGGGCUGGUUCCGGAAUCGCUUUGCCAGCUGGACAGCAAUCAGGAAUCCUUUGCGCUAGAGAUAAUGCAAUCCUGAACCGCCUGGGCCACA
...........(((((..(((.(((((.(((...((.(((....((((...((((..(((...))))))).))))...))).))..))).))))))))..))))).. ( -39.90)
>DroSec_CAF1 32649 106 - 1
AUUUACUGGUUUGGCUUGGGCUGGUUAAGGAAUUGCUUUGCCAGCUGGACAUCAAUAAGGAAAUCUUUGCGGUAGAGAAAGUGCAU-ACCGAACCGCCUGGGCCACA
...........(((((..(((.((((..((...(((((((((.((.(((..((......))..)))..))))))))......))).-.)).)))))))..))))).. ( -34.50)
>DroSim_CAF1 29615 106 - 1
AUUUACUGGUUGGGCUUGGGCUGGUUAAGGAAUUGCUUUGCCAGCUGGACAUCAAUAAGGAAAUCUUUGCGGUAGAGAAAGUGCAU-UCCGAACCGCCUGGGCCACA
............((((..(((.((((..(((((..(((((((.((.(((..((......))..)))..))))))))).......))-))).)))))))..))))... ( -37.60)
>DroYak_CAF1 33395 107 - 1
AUUCAGUGGUUUGGCUUGGGCUGGUUCCGGAUCUGAUUUGCCAGCUGGCCAGCAAUCAGGAAUCUUUUGCGCCAGAGAGAAUGCAAUCAUGAACCGCCUGGGCCACA
...........(((((..(((.(((((..(((.((((((.....(((((..((((...........)))))))))...)))).)))))..))))))))..))))).. ( -39.20)
>consensus
AUUCACUGGUUUGGCUUGGGCUGGUUAAGGAAUUGCUUUGCCAGCUGGACAGCAAUAAGGAAACCUUUGCGCUAGAGAAAAUGCAA_CCCGAACCGCCUGGGCCACA
............((((..(((.(((((.((((.(((........((((...((((..(((...))))))).)))).......))))))).))))))))..))))... (-26.91 = -29.16 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:03 2006