Locus 6690

Sequence ID X_DroMel_CAF1
Location 16,711,870 – 16,711,961
Length 91
Max. P 0.554205
window10919

overview

Window 9

Location 16,711,870 – 16,711,961
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 84.03
Mean single sequence MFE -16.77
Consensus MFE -15.72
Energy contribution -14.83
Covariance contribution -0.88
Combinations/Pair 1.18
Mean z-score -0.49
Structure conservation index 0.94
SVM decision value 0.04
SVM RNA-class probability 0.554205
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16711870 91 - 22224390
CCUCUGCCAUGCAACUGCCUGCUCCCCCCCCCCCCCCCGUGGAACCCACCACCCGCCGCUUGCACCCACAAUUGGAUUCGAUCGGCAAGUA
.....((...((....))..))................((((......))))..((((.(((...(((....)))...))).))))..... ( -17.00)
>DroSec_CAF1 28015 80 - 1
CCCCUGCCACCGAACUCCCUGC----------CC-CCCGCGGAUCCCGCCACCCGCCGCUUGCACCCACAAUUGGAUUCGAUCGGCAAGCA
....((((..((((.....(((----------..-.(.((((..........)))).)...))).(((....))).))))...)))).... ( -17.00)
>DroSim_CAF1 24904 81 - 1
CCUCUGCCACCGAACUCCCUGC----------CCCCCCGCGGAUCCCGUCACCCGCCGCUUGCACCCACAAUUGGAUUCGAUCGGCAAGCA
....((((..((((.....(((----------....(.((((..........)))).)...))).(((....))).))))...)))).... ( -16.30)
>consensus
CCUCUGCCACCGAACUCCCUGC__________CCCCCCGCGGAUCCCGCCACCCGCCGCUUGCACCCACAAUUGGAUUCGAUCGGCAAGCA
....(((...............................((((...)))).....((((.(((...(((....)))...))).))))..))) (-15.72 = -14.83 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:02 2006